| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_057166 |
|---|---|
| Gene Symbol: | COL6A3 |
| Description: | Homo sapiens collagen, type VI, alpha 3 (COL6A3), transcript variant 1, mRNA. |
| Gene Location: | chr2(-):238232654-238322850 |
| Browse Associations | |
| Browse Pathways | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr2:g.237324297A>T | COSN1832541 | RK015_C01 | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-1275 |
cctgCCCCCAatttcccag |
0 | GUGGGGGA | m6b | Disrupted | -0.192000 | no TS |
10.490000 |
| hsa-miR-4278 |
cctgCCCCCTAtttcccag |
0 | CUAGGGGG | m7b | Created | no TS | -0.235000 |
-4.690000 |
| hsa-miR-4488 |
cctGCCCCCTatttcccag |
0 | AGGGGGCG | m7a | (m6b->m7a) | -0.236000 | no TS |
-0.040000 |
| hsa-miR-4665-5p |
cctgCCCCCAatttcccag |
0 | CUGGGGGA | m6b | Disrupted | -0.199000 | no TS |
2.630000 |
| hsa-miR-4697-5p |
cctGCCCCCTatttcccag |
0 | AGGGGGCG | m7a | (m6b->m7a) | -0.239000 | no TS |
-0.040000 |
| hsa-miR-4716-3p |
cctgCCCCCTatttcccag |
0 | AAGGGGGA | m6b | Created | no TS | -0.216000 |
-5.000000 |
| hsa-miR-1275 |
cctgCCCCCAatttcccag |
0 | GUGGGGGA | m6b | Disrupted | -0.192 | no TS |
10.49 |
| hsa-miR-4278 |
cctgCCCCCTAtttcccag |
0 | CUAGGGGG | m7b | Created | no TS | -0.235 |
-4.69 |
| hsa-miR-4488 |
cctGCCCCCTatttcccag |
0 | AGGGGGCG | m7a | (m6b->m7a) | -0.236 | no TS |
-0.04 |
| hsa-miR-4665-5p |
cctgCCCCCAatttcccag |
0 | CUGGGGGA | m6b | Disrupted | -0.199 | no TS |
2.63 |
| hsa-miR-4697-5p |
cctGCCCCCTatttcccag |
0 | AGGGGGCG | m7a | (m6b->m7a) | -0.239 | no TS |
-0.04 |
| hsa-miR-4716-3p |
cctgCCCCCTatttcccag |
0 | AAGGGGGA | m6b | Created | no TS | -0.216 |
-5 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr2:g.237324559C>G | COSN7241178 | 8014573 | [pancreas][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-146a-5p |
ggcAGTTCTCtcgaatact |
2 |
UGAGAACU | m7b | (m7b->m6c) | -0.075000 | no TS |
1.510000 |
| hsa-miR-146b-5p |
ggcAGTTCTCtcgaatact |
2 |
UGAGAACU | m7b | (m7b->m6c) | -0.075000 | no TS |
1.510000 |
| hsa-miR-196b-3p |
ggcagttCTGTCGAatact |
0 | UCGACAGC | m7a | Created | no TS | -0.224000 |
-6.470000 |
| hsa-miR-3925-5p |
ggcaGTTCTCTcgaatact |
2 |
AAGAGAAC | m7b | Disrupted | -0.131000 | no TS |
2.110000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr2:g.237324645C>G | COSN8991010 | AOCS-108-1-7 | [ovary][NS][other][neoplasm] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-4740-3p |
acactcgaaCTCGGGaggg |
5 |
GCCCGAGA | m6b | Disrupted | -0.208000 | no TS |
0.330000 |