SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_000091
Gene Symbol: COL4A3
Description: Homo sapiens collagen, type IV, alpha 3 (Goodpasture antigen) (COL4A3), mRNA.
Gene Location: chr2(+):228029280-228179508

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr2:g.227312228T>G ICGC_67EDDF4E-2A78-11E2-81E0-FDFC496BB9B8 CPCG_0003_Pr_P_F0 [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr2:g.227313612G>A 9_12475 CRC-3-Tumor Colorectal adenocarcinoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3121-5p catgaccCAAAGGAcagca
 13
 UCCUUUGC m7a Created no TS 0.049 -0.23
hsa-miR-326 catgaCCCAGAGGacagca
 0 CCUCUGGG m8a Disrupted -0.062 no TS 1.06
hsa-miR-330-5p catgaCCCAGAGgacagca
 0 UCUCUGGG m7b Disrupted -0.09 no TS 1.74
hsa-miR-3909 catgacccAGAGGACAgca
 11
 UGUCCUCU m8a Disrupted -0.047 no TS 1.51

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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