SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000089 |
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Gene Symbol: | COL1A2 |
Description: | Homo sapiens collagen, type I, alpha 2 (COL1A2), mRNA. |
Gene Location: | chr7(+):94023872-94060544 |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.94430575T>G | COSN8047869 | 8057559 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1206 |
cagtttCATGAACtccttc |
0 | UGUUCAUG | m7b | Created | no TS | -0.171000 |
-4.040000 |
|
hsa-miR-433 |
cagttTCATGAactccttc |
0 | AUCAUGAU | m6b | Created | no TS | -0.052000 |
-4.190000 |
|
hsa-miR-4424 |
cagtttcaTTAACTCcttc |
3 |
AGAGUUAA | m7b | Disrupted | -0.134000 | no TS |
1.110000 |
|
hsa-miR-4653-3p |
cagtttcatTAACTCCttc |
3 |
UGGAGUUA | m7b | (m7b->m6c) | -0.189000 | no TS |
2.190000 |
|
hsa-miR-569 |
cagtttCATTAACTccttc |
2 |
AGUUAAUG | m8a | Disrupted | -0.125000 | no TS |
4.430000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr7:g.94430589G>A | 0_292 | Prostate cancer | ||||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1275 |
cctTCCCCCACtcccccaa |
5 |
GUGGGGGA | m8a | Created | -0.39 | -0.663 |
-1.05 |
hsa-miR-4447 |
ccttCCCCCACtcccccaa |
5 |
GGUGGGGG | m7b | Created | no TS | -0.3 |
-1.31 |
hsa-miR-4472 |
ccttCCCCCACtcccccaa |
5 |
GGUGGGGG | m7b | Created | no TS | -0.3 |
-1.32 |
hsa-miR-4481 |
ccttccCCCACTCCcccaa |
5 |
GGAGUGGG | m8a | Created | no TS | -0.19 |
-1.34 |
hsa-miR-4665-5p |
cctTCCCCCActcccccaa |
5 |
CUGGGGGA | m7b | (m6b->m7b) | -0.411 | -0.694 |
2.11 |
hsa-miR-4723-5p |
cctTCCCCCActcccccaa |
5 |
UGGGGGAG | m7a | (m6a->m7a) | -0.449 | -0.691 |
2.05 |
hsa-miR-4745-5p |
ccttccCCCACTCccccaa |
5 |
UGAGUGGG | m7b | Created | no TS | -0.18 |
-1.28 |
hsa-miR-4781-5p |
ccttcCCCCGCTcccccaa |
5 |
UAGCGGGG | m7b | Disrupted | -0.297 | no TS |
7.56 |
hsa-miR-5698 |
cctTCCCCCActcccccaa |
5 |
UGGGGGAG | m7a | (m6a->m7a) | -0.449 | -0.691 |
-1.0 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
94430587 | rs1060399 | C | C |
hsa-miR-4271 hsa-miR-4725-3p hsa-miR-4781-5p hsa-miR-625-5p hsa-miR-6780b-5p |
1 1 2 2 1 |
CTTCCCCcgctcc CTTCCCCcgctcc cttcCCCCGCTcc cTTCCCCCgctcc CTTCCCCcgctcc |
Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N |
-0.155 -0.155 -0.297 -0.161 -0.146 |
94430588 | rs190115417 | C | C |
hsa-miR-4781-5p hsa-miR-6090 hsa-miR-625-5p |
2 2 2 |
ttcCCCCGCTccc ttccccCGCTCCC TTCCCCCgctccc |
Disrupted Disrupted Disrupted |
N N N |
-0.297 -0.239 -0.158 |
T |
hsa-miR-1909-3p hsa-miR-6081 hsa-miR-6510-5p hsa-miR-6722-3p hsa-miR-6783-5p |
2 2 2 2 2 |
ttCCCCTGCtccc ttcccCTGCTCCc ttcCCCTGCTccc ttCCCCTGCtccc TTCCCCTgctccc |
Created Created Created Created Created |
N N N N N |
-0.277 -0.17 -0.211 -0.277 -0.152 |
|||
94430598 | rs6955879 | A | A |
hsa-miR-1275 hsa-miR-4260 hsa-miR-450a-2-3p hsa-miR-4665-5p hsa-miR-5572 hsa-miR-6751-5p hsa-miR-6803-5p hsa-miR-7109-5p |
2 3 3 2 3 2 2 2 |
CCCCCAAaaattt cCCCCAAAaattt cCCCCAAAaattt CCCCCAAaaattt cCCCCAAAaattt CCCCCAAaaattt CCCCCAAaaattt CCCCCAAaaattt |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N |
-0.204 -0.163 -0.15 -0.207 -0.176 -0.198 -0.208 -0.2 |
G |
hsa-miR-3606-3p hsa-miR-4314 hsa-miR-4667-5p hsa-miR-4700-5p hsa-miR-513a-3p hsa-miR-513c-3p hsa-miR-637 hsa-miR-7155-5p hsa-miR-8089 |
20 1 3 3 14 14 2 3 3 |
cccccaGAAATTT ccCCCAGAAattt cCCCCAGAaattt cCCCCAGAaattt cccccaGAAATTT cccccaGAAATTT CCCCCAGAaattt cCCCCAGAaattt cCCCCAGAaattt |
Created Created Created Created Created Created Created Created Created |
N N N N N N N N N |
0.043 -0.156 -0.199 -0.182 0.024 0.024 -0.518 -0.192 -0.196 |