| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_001298 |
|---|---|
| Gene Symbol: | CNGA3 |
| Description: | Homo sapiens cyclic nucleotide gated channel alpha 3 (CNGA3), transcript variant 2, mRNA. |
| Gene Location: | chr2(+):98962617-99015064 |
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| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr2:g.98398192G>T | COSN9394256 | AOCS-104-1-6 | [ovary][NS][other][neoplasm] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-1236 |
acccatGAAGAGGaagcct |
5 |
CCUCUUCC | m7a | Disrupted | -0.002000 | -0.002000 |
0.010000 |
| hsa-miR-26a-1-3p |
acccatGAATAGGaagcct |
0 | CCUAUUCU | m7a | Created | NA | NA |
-2.410000 |
| hsa-miR-26a-2-3p |
acccatGAATAGGaagcct |
0 | CCUAUUCU | m7a | Created | NA | NA |
-1.430000 |
| hsa-miR-337-3p |
acccatgaATAGGAagcct |
0 | CUCCUAUA | m6b | Created | no TS | -0.034000 |
-11.010000 |
| hsa-miR-877-3p |
acccatGAAGAGGAagcct |
0 | UCCUCUUC | m8a | Disrupted | -0.224000 | no TS |
0.020000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr2:g.98398582A>T | COSN7996219 | PCSI_0218_Pa_P_526 | [pancreas][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-4796-5p |
ggaaaaaTATAGACctgga |
0 | UGUCUAUA | m7b | Created | no TS | -0.225000 |
-0.650000 |