SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_000086
Gene Symbol: CLN3
Description: Homo sapiens ceroid-lipofuscinosis, neuronal 3 (CLN3), transcript variant 2, mRNA.
Gene Location: chr16(-):28488599-28503403
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr16:g.28477409C>T COSN1185027 HCC41T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4747-5p cccagCCTTCCCggcaggt
3
AGGGAAGG m7b Disrupted -0.090000 no TS 1.640000
hsa-miR-5196-5p cccagCCTTCCCggcaggt
3
AGGGAAGG m7b Disrupted -0.109000 no TS 2.640000
hsa-miR-4747-5p cccagCCTTCCCggcaggt
3
AGGGAAGG m7b Disrupted -0.090000 no TS 1.640000
hsa-miR-5196-5p cccagCCTTCCCggcaggt
3
AGGGAAGG m7b Disrupted -0.109000 no TS 2.640000
hsa-miR-4747-5p cccagCCTTCCCggcaggt
0 AGGGAAGG m7b Disrupted -0.09 no TS 1.64
hsa-miR-5196-5p cccagCCTTCCCggcaggt
0 AGGGAAGG m7b Disrupted -0.109 no TS 2.64

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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