SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000086 |
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Gene Symbol: | CLN3 |
Description: | Homo sapiens ceroid-lipofuscinosis, neuronal 3 (CLN3), transcript variant 2, mRNA. |
Gene Location: | chr16(-):28488599-28503403 |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
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chr16:g.28477409C>T | COSN1185027 | HCC41T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4747-5p |
cccagCCTTCCCggcaggt |
3 |
AGGGAAGG | m7b | Disrupted | -0.090000 | no TS |
1.640000 |
hsa-miR-5196-5p |
cccagCCTTCCCggcaggt |
3 |
AGGGAAGG | m7b | Disrupted | -0.109000 | no TS |
2.640000 |
hsa-miR-4747-5p |
cccagCCTTCCCggcaggt |
3 |
AGGGAAGG | m7b | Disrupted | -0.090000 | no TS |
1.640000 |
hsa-miR-5196-5p |
cccagCCTTCCCggcaggt |
3 |
AGGGAAGG | m7b | Disrupted | -0.109000 | no TS |
2.640000 |
hsa-miR-4747-5p |
cccagCCTTCCCggcaggt |
0 | AGGGAAGG | m7b | Disrupted | -0.09 | no TS |
1.64 |
hsa-miR-5196-5p |
cccagCCTTCCCggcaggt |
0 | AGGGAAGG | m7b | Disrupted | -0.109 | no TS |
2.64 |