SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001185056 |
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Gene Symbol: | CLDN11 |
Description: | Homo sapiens claudin 11 (CLDN11), transcript variant 2, mRNA. |
Gene Location: | chr3(+):170139027-170152479 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.170432797G>T | COSN6753128 | RK053_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1285-3p |
tagatgctgTGCCCAGggc |
2 |
UCUGGGCA | m7b | (m6c->m7b) | -0.617000 | -0.734000 | No effect |
hsa-miR-296-5p |
tagatgctGGGCCCagggc |
2 |
AGGGCCCC | m6b | Disrupted | -0.186000 | no TS |
0.070000 |
hsa-miR-3187-5p |
tagatgctgTGCCCAGGgc |
2 |
CCUGGGCA | m8a | (m7b->m8a) | -0.596000 | -0.704000 | No effect |
hsa-miR-338-3p |
tagATGCTGGgcccagggc |
5 |
UCCAGCAU | m7b | (m7b->m6b) | -0.073000 | no TS |
-0.070000 |
hsa-miR-5189 |
tagatgctgTGCCCAGggc |
2 |
UCUGGGCA | m7b | (m6c->m7b) | -0.615000 | -0.732000 |
-3.270000 |
hsa-miR-612 |
tagatgctgTGCCCAGggc |
2 |
GCUGGGCA | m7b | (m6c->m7b) | -0.670000 | -0.815000 |
-2.030000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.170432984C>G | COSN8488671 | 227_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-191-5p |
tttttTTCCGTTGgtgttg |
0 | CAACGGAA | m8a | Created | no TS | -0.255000 |
-0.030000 |
hsa-miR-4668-5p |
tttTTTTCCCTtggtgttg |
0 | AGGGAAAA | m8a | Disrupted | -0.142000 | no TS |
0.060000 |
hsa-miR-5584-5p |
ttttTTTCCCTtggtgttg |
0 | CAGGGAAA | m7b | Disrupted | -0.185000 | -0.032000 |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.170433087C>T | COSN15416683 | AOCS-167-16-X | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3145-3p |
ttttgcAAATATCactgag |
0 | AGAUAUUU | m7b | Created | no TS | -0.071000 |
-0.210000 |
hsa-miR-3689a-5p |
ttttgcaaATATCACtgag |
0 | UGUGAUAU | m7b | Created | no TS | -0.129000 | No effect |
hsa-miR-3689b-5p |
ttttgcaaATATCACtgag |
0 | UGUGAUAU | m7b | Created | no TS | -0.129000 | No effect |
hsa-miR-3689e |
ttttgcaaATATCACtgag |
0 | UGUGAUAU | m7b | Created | no TS | -0.129000 | No effect |
hsa-miR-3689f |
ttttgcaaATATCACtgag |
0 | UGUGAUAU | m7b | Created | no TS | -0.147000 |
-0.150000 |
hsa-miR-557 |
tttTGCAAACatcactgag |
0 | GUUUGCAC | m7a | (m7a->m6a) | -0.001000 | -0.001000 | No effect |
hsa-miR-3145-3p |
ttttgcAAATATCactgag |
0 | AGAUAUUU | m7b | Created | no TS | -0.071000 |
-0.210000 |
hsa-miR-3689a-5p |
ttttgcaaATATCACtgag |
0 | UGUGAUAU | m7b | Created | no TS | -0.129000 | No effect |
hsa-miR-3689b-5p |
ttttgcaaATATCACtgag |
0 | UGUGAUAU | m7b | Created | no TS | -0.129000 | No effect |
hsa-miR-3689e |
ttttgcaaATATCACtgag |
0 | UGUGAUAU | m7b | Created | no TS | -0.129000 | No effect |
hsa-miR-3689f |
ttttgcaaATATCACtgag |
0 | UGUGAUAU | m7b | Created | no TS | -0.147000 |
-0.150000 |
hsa-miR-557 |
tttTGCAAACatcactgag |
0 | GUUUGCAC | m7a | (m7a->m6a) | -0.001000 | -0.001000 | No effect |
hsa-miR-3145-3p |
ttttgcAAATATCactgag |
0 | AGAUAUUU | m7b | Created | no TS | -0.071000 |
-0.210000 |
hsa-miR-3689a-5p |
ttttgcaaATATCACtgag |
0 | UGUGAUAU | m7b | Created | no TS | -0.129000 | No effect |
hsa-miR-3689b-5p |
ttttgcaaATATCACtgag |
0 | UGUGAUAU | m7b | Created | no TS | -0.129000 | No effect |
hsa-miR-3689e |
ttttgcaaATATCACtgag |
0 | UGUGAUAU | m7b | Created | no TS | -0.129000 | No effect |
hsa-miR-3689f |
ttttgcaaATATCACtgag |
0 | UGUGAUAU | m7b | Created | no TS | -0.147000 |
-0.150000 |
hsa-miR-557 |
tttTGCAAACatcactgag |
0 | GUUUGCAC | m7a | (m7a->m6a) | -0.001000 | -0.001000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.170433407T>C | ICGC_73FBA398-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4530 |
cccaaagTGCTGGGattat |
0 | CCCAGCAG | m7a | Created | NA | NA |
-7.84 |
hsa-miR-4733-5p |
cccaaagtgTTGGGATTat |
0 | AAUCCCAA | m8a | (m8a->m7b) | -0.058 | no TS |
0.01 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.170433651->T | cosmic_v64_1870281 | NA | [upper_aerodigestive_tract][mouth][carcinoma][squamous_cell_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1323 |
tttttAGTTTTGtgatttta |
0 | UCAAAACU | m7b | Created | no TS | -0.038000 |
-0.010000 |
hsa-miR-548o-3p |
tttttAGTTTTGtgatttta |
0 | CCAAAACU | m7b | Created | no TS | -0.047000 |
-0.040000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.170433682T>A | COSN9763673 | C0089T | [kidney][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-643 |
catactttTACAAGattga |
2 |
ACUUGUAU | m6b | Created | -0.266000 | -0.306000 |
-3.140000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.170433745A>T | COSN5040516 | HX33T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-362-5p |
tatgAAGGATatgaaccac |
0 | AAUCCUUG | m6b | Created | no TS | -0.029000 |
-2.610000 |
hsa-miR-5007-3p |
tatgaaggATATGAaccac |
6 |
AUCAUAUG | m6b | Created | 0.056000 | 0.110000 |
0.930000 |
hsa-miR-500b |
tatgAAGGATatgaaccac |
0 | AAUCCUUG | m6b | Created | no TS | -0.036000 |
-0.820000 |
hsa-miR-501-5p |
tatgAAGGATatgaaccac |
0 | AAUCCUUU | m6b | Created | no TS | -0.027000 | No effect |
hsa-miR-5696 |
tatgaaggAAATGAaccac |
14 |
CUCAUUUA | m6b | Disrupted | 0.095000 | no TS |
0.060000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.170434255C>T | 9_129767 | CRC-1-Tumor | Colorectal adenocarcinoma | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |