SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_000085
Gene Symbol: CLCNKB
Description: Homo sapiens chloride channel Kb (CLCNKB), transcript variant 1, mRNA.
Gene Location: chr1(+):16370246-16383803
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.16057052T>C COSN1410294 RK068_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-219-1-3p caggCAACTCTaacctagc
 0 AGAGUUGA m7a Created NA NA -0.190000
hsa-miR-548at-5p caggcAACTTTaacctagc
 0 AAAAGUUA m6b Disrupted 0.023000 no TS 4.200000
hsa-miR-561-3p caggcAACTTTaacctagc
 0 CAAAGUUU m6b Disrupted 0.040000 no TS -0.190000
hsa-miR-219-1-3p caggCAACTCTaacctagc
 0 AGAGUUGA m7a Created NA NA -0.190000
hsa-miR-548at-5p caggcAACTTTaacctagc
 0 AAAAGUUA m6b Disrupted 0.023000 no TS 4.200000
hsa-miR-561-3p caggcAACTTTaacctagc
 0 CAAAGUUU m6b Disrupted 0.040000 no TS -0.190000
hsa-miR-219-1-3p caggCAACTCTaacctagc
 0 AGAGUUGA m7a Created NA NA -0.190000
hsa-miR-548at-5p caggcAACTTTaacctagc
 0 AAAAGUUA m6b Disrupted 0.023000 no TS 4.200000
hsa-miR-561-3p caggcAACTTTaacctagc
 0 CAAAGUUU m6b Disrupted 0.040000 no TS -0.190000
hsa-miR-219-1-3p caggCAACTCTaacctagc
 0 AGAGUUGA m7a Created NA NA -0.19
hsa-miR-548at-5p caggcAACTTTaacctagc
 0 AAAAGUUA m6b Disrupted 0.023 no TS 4.2
hsa-miR-561-3p caggcAACTTTaacctagc
 0 CAAAGUUU m6b Disrupted 0.04 no TS -0.19

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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