SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_004273 |
---|---|
Gene Symbol: | CHST3 |
Description: | Homo sapiens carbohydrate (chondroitin 6) sulfotransferase 3 (CHST3), mRNA. |
Gene Location: | chr10(+):73724119-73773322 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr10:g.72008727G>T | COSN10072331 | C0032T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1538 |
ggcaggcCCGGGCCtgttg |
2 |
CGGCCCGG | m7b | Disrupted | -0.426000 | -0.132000 |
0.200000 |
|
hsa-miR-1972 |
ggcaggcccTGGCCTGttg |
3 |
UCAGGCCA | m7b | (m6c->m7b) | -0.036000 | -0.151000 | No effect | |
hsa-miR-3918 |
ggcaGGCCCTGgcctgttg |
0 | ACAGGGCC | m7b | Created | -0.119000 | -0.289000 | No effect | |
hsa-miR-4512 |
ggcAGGCCCTGgcctgttg |
0 | CAGGGCCU | m8a | Created | -0.099000 | -0.218000 | No effect | |
hsa-miR-4685-5p |
ggcagGCCCTGGcctgttg |
0 | CCCAGGGC | m7b | Created | -0.079000 | -0.222000 | No effect | |
hsa-miR-4745-3p |
ggcaggcCCGGGCCtgttg |
2 |
UGGCCCGG | m7b | Disrupted | -0.360000 | -0.104000 | No effect | |
hsa-miR-4747-3p |
ggcaggccCGGGCCTgttg |
3 |
AAGGCCCG | m7b | Disrupted | -0.396000 | -0.182000 |
0.090000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr10:g.72008922G>C | COSN8719818 | AOCS-081-1-1 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1976 |
gggtccttGCAGGAGGggc |
4 |
CCUCCUGC | m8a | Created | -0.046000 | -0.140000 | No effect | |
hsa-miR-2276 |
gggtcCTTGCAGgaggggc |
6 |
UCUGCAAG | m7b | Created | -0.087000 | -0.116000 | No effect | |
hsa-miR-4691-5p |
gggtcctTGGAGGAggggc |
2 |
GUCCUCCA | m7b | Disrupted | 0.005000 | 0.068000 | No effect | |
hsa-miR-4708-3p |
gggtCCTTGCaggaggggc |
0 | AGCAAGGC | m6b | Created | no TS | -0.051000 | No effect | |
hsa-miR-4772-3p |
gggtccTTGCAGGaggggc |
6 |
CCUGCAAC | m7a | Created | -0.123000 | -0.123000 | No effect | |
hsa-miR-5193 |
gggtccttgGAGGAGGggc |
2 |
UCCUCCUC | m7b | (m7b->m6c) | 0.052000 | 0.139000 | No effect | |
hsa-miR-5695 |
gggtcCTTGGAGgaggggc |
2 |
ACUCCAAG | m7b | Disrupted | 0.161000 | 0.176000 |
1.980000 |
|
hsa-miR-660-3p |
gggtccttgCAGGAGGggc |
4 |
ACCUCCUG | m7b | (m6c->m7b) | 0.268000 | 0.223000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr10:g.72009095G>A | COSN10072332 | C0002T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-let-7d-3p |
cacacatgCGTATAGacat |
0 | CUAUACGA | m7a | Disrupted | NA | NA |
0.160000 |
|
hsa-let-7e-3p |
cacacatgCGTATAGacat |
0 | CUAUACGG | m7a | Disrupted | NA | NA |
0.010000 |
|
hsa-miR-4666b |
cacACATGCAtatagacat |
0 | UUGCAUGU | m7b | (m6b->m7b) | -0.231000 | -0.370000 |
-1.150000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr10:g.72009565C>T | CHST3_E3_UTR_3 | SJHYPO036_D | Hypodiploid_ALL | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3667-5p |
ctcacgGGGTCTTccattt |
0 | AAAGACCC | m7b | Created | no TS | -0.006 | No effect | |
hsa-miR-4493 |
ctcacggGGCCTTCcattt |
2 |
AGAAGGCC | m7b | Disrupted | -0.038 | -0.03 |
0.01 |
|
hsa-miR-7-5p |
ctcacgggGTCTTCCAttt |
0 | UGGAAGAC | m8a | Created | 0.077 | 0.056 |
-2.83 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr10:g.72009795T>G | 9_48727 | CRC-5-Tumor | Colorectal adenocarcinoma | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3065-5p |
tgtTTTGTTGcgggctttt |
0 | UCAACAAA | m7b | (m6b->m7b) | 0.217 | 0.36 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr10:g.72010012A>T | COSN8640457 | 3498_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-128 |
gcaggcCACTGTGccctat |
0 | UCACAGUG | m7b | Created | 0.074000 | 0.245000 | No effect | |
hsa-miR-3677-5p |
gcaGGCCACTGtgccctat |
0 | CAGUGGCC | m8a | Created | no TS | -0.017000 | No effect | |
hsa-miR-3681-3p |
gcaggcCACTGTGccctat |
0 | ACACAGUG | m7b | Created | 0.046000 | 0.180000 |
-0.140000 |
|
hsa-miR-4318 |
gcaggCCACAGTGccctat |
7 |
CACUGUGG | m8a | Disrupted | 0.107000 | no TS | No effect | |
hsa-miR-5693 |
gcagGCCACTGtgccctat |
0 | GCAGUGGC | m7b | Created | no TS | 0.075000 |
-0.050000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr10:g.72010198G>A | COSN1499972 | RK066_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3655 |
atgacaagCGACAAGtgta |
1 |
GCUUGUCG | m7b | Disrupted | 0.044000 | no TS |
1.970000 |
|
hsa-miR-744-3p |
atgacaaGCAACAagtgta |
2 |
CUGUUGCC | m6b | Created | 0.002000 | 0.064000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr10:g.72010952G>A | COSN5883132 | RK190_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1263 |
tctgaggatGGTACCAaga |
0 | AUGGUACC | m7b | (m7b->m6c) | -0.077000 | 0.010000 |
0.830000 |
|
hsa-miR-181c-3p |
tctgagGATGGTaccaaga |
1 |
AACCAUCG | m6b | Disrupted | 0.019000 | no TS |
7.330000 |
|
hsa-miR-5196-3p |
tctGAGGATGgtaccaaga |
2 |
UCAUCCUC | m7b | (m7b->m6b) | 0.058000 | no TS |
0.080000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr10:g.72011454T>C | COSN1499973 | RK106_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1262 |
agTCACCCATgtggatatg |
1 |
AUGGGUGA | m8a | (m8a->m7a) | 0.025000 | 0.052000 | No effect | |
hsa-miR-4701-3p |
agTCACCCATgtggatatg |
1 |
AUGGGUGA | m8a | (m8a->m7a) | 0.044000 | 0.071000 | No effect | |
hsa-miR-4717-3p |
agtcacCCATGTGgatatg |
0 | ACACAUGG | m7b | Disrupted | 0.177000 | 0.146000 |
3.900000 |
|
hsa-miR-5092 |
agtcacccaCGTGGATatg |
1 |
AAUCCACG | m7b | (m6c->m7b) | -0.008000 | -0.067000 | No effect | |
hsa-miR-1262 |
agTCACCCATgtggatatg |
0 | AUGGGUGA | m8a | (m8a->m7a) | 0.025 | 0.052 | No effect | |
hsa-miR-4701-3p |
agTCACCCATgtggatatg |
0 | AUGGGUGA | m8a | (m8a->m7a) | 0.044 | 0.071 | No effect | |
hsa-miR-4717-3p |
agtcacCCATGTGgatatg |
1 |
ACACAUGG | m7b | Disrupted | 0.177 | 0.146 |
3.9 |
|
hsa-miR-5092 |
agtcacccaCGTGGATatg |
0 | AAUCCACG | m7b | (m6c->m7b) | -0.008 | -0.067 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.72011689A>G | COSN6405555 | HX36T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
72008639 | rs182175534 | G | |||||||
A |
hsa-miR-2117 hsa-miR-2276-3p hsa-miR-3191-5p hsa-miR-4772-3p hsa-miR-6728-3p |
2 1 2 1 2 |
aattgcAGAGAAC aaTTGCAGAgaac aattgCAGAGAAc aaTTGCAGAgaac aattGCAGAGAac |
Created Created Created Created Created |
N N N N N |
-0.144 -0.069 -0.069 -0.078 -0.115 |
|||
72008726 | rs114569872 | C | C |
hsa-miR-1538 hsa-miR-2861 hsa-miR-4745-3p hsa-miR-4747-3p hsa-miR-6749-5p |
5 4 5 6 4 |
caggcCCGGGCCt CAGGCCCgggcct caggcCCGGGCCt caggccCGGGCCT cAGGCCCGggcct |
Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N |
-0.294 -0.136 -0.256 -0.214 -0.192 |
T |
hsa-miR-4650-5p |
4 |
cAGGCCTGggcct |
Created |
N |
-0.104 |
|||
72008868 | rs138805155 | G | G |
hsa-miR-21-3p hsa-miR-3591-3p |
2 2 |
tattTGGTGTTAa tattTGGTGTTAa |
Disrupted Disrupted |
N N |
-0.278 -0.288 |
T |
hsa-miR-3065-5p hsa-miR-3529-3p hsa-miR-7-1-3p hsa-miR-7-2-3p |
2 2 2 2 |
taTTTGTTGttaa tatTTGTTGTtaa tATTTGTTgttaa tATTTGTTgttaa |
Created Created Created Created |
N N N N |
-0.085 -0.101 -0.016 -0.006 |
|||
72009326 | rs181471425 | A | A |
hsa-miR-1910-5p hsa-miR-455-3p |
9 8 |
gtttGGACTGAac gttTGGACTGAac |
Disrupted Disrupted |
N N |
-0.066 -0.175 |
C |
hsa-miR-1972 hsa-miR-3926 hsa-miR-4650-5p |
8 6 9 |
gttTGGCCTGAac gTTTGGCCtgaac gtttGGCCTGAac |
Created Created Created |
N N N |
-0.231 -0.019 -0.093 |
|||
72009749 | rs4148943 | T | C |
hsa-miR-1915-3p hsa-miR-3918 hsa-miR-4685-5p hsa-miR-4726-3p hsa-miR-6764-5p hsa-miR-6837-5p hsa-miR-6840-3p hsa-miR-7160-3p |
1 1 1 1 1 1 1 1 |
tagggCCCTGGGA tagGGCCCTGgga taggGCCCTGGga tagggcCCTGGGA tagggCCCTGGGA taggGCCCTGGga tagggcCCTGGGA taGGGCCCTggga |
Created Created Created Created Created Created Created Created |
N N N N N N N N |
-0.096 -0.076 -0.06 -0.027 -0.086 -0.078 -0.007 -0.122 |
T |
hsa-miR-1233-3p |
1 |
tAGGGCTCtggga |
Disrupted |
N |
-0.07 |
|||
72009897 | rs76062174 | T | T |
hsa-miR-4687-5p |
3 |
GAGGGCTtgaggg |
Disrupted |
N |
-0.029 |
C |
hsa-miR-1972 hsa-miR-4650-5p |
2 2 |
gagGGCCTGAggg gagGGCCTGAggg |
Created Created |
N N |
0.009 0.014 |
|||
72009993 | rs150772968 | T | T |
hsa-miR-4701-5p hsa-miR-588 hsa-miR-6800-3p |
5 5 2 |
gagagGTGGCCAc gagagGTGGCCAc GAGAGGTggccac |
Disrupted Disrupted Disrupted |
N N N |
0.044 0.053 0.101 |
A |
hsa-miR-3183 hsa-miR-4723-3p hsa-miR-4757-5p hsa-miR-5193 hsa-miR-6744-3p hsa-miR-6769b-3p hsa-miR-6791-3p hsa-miR-6829-3p hsa-miR-6878-3p hsa-miR-7111-3p |
2 2 5 2 5 2 6 6 5 2 |
GAGAGGAggccac GAGAGGAggccac gagagGAGGCCAc gaGAGGAGGccac gagagGAGGCCAc GAGAGGAggccac gagAGGAGGCcac gagAGGAGGCcac gagagGAGGCCAc GAGAGGAggccac |
Created Created Created Created Created Created Created Created Created Created |
N N N N N N N N N N |
0.067 0.046 -0.001 0.04 0.003 0.067 0.044 0.053 0.034 0.087 |
|||
72011326 | rs144248670 | C | C |
hsa-miR-5092 |
2 |
caagcgCGTGGAT |
Disrupted |
N |
0.001 |
72011510 | rs74145519 | C | C |
hsa-miR-1538 hsa-miR-4745-3p hsa-miR-4747-3p |
2 2 2 |
ggtggCCGGGCCt ggtggCCGGGCCt ggtggcCGGGCCT |
Disrupted Disrupted Disrupted |
N N N |
-0.132 -0.104 -0.053 |
T |
hsa-miR-4691-3p |
1 |
gGTGGCTGggcct |
Created |
N |
0.068 |
|||
72012256 | rs1871450 | G | G |
hsa-miR-660-3p hsa-miR-6816-3p hsa-miR-6861-3p |
4 6 6 |
CAGGAGGtccttc caggaGGTCCTTc cagGAGGTCCttc |
Disrupted Disrupted Disrupted |
N N N |
0.028 -0.008 -0.04 |
A |
hsa-miR-1976 |
4 |
CAGGAGAtccttc |
Created |
N |
-0.066 |
|||
72012355 | rs77908871 | A | A |
hsa-miR-1295b-3p hsa-miR-4747-3p hsa-miR-6826-5p |
2 3 1 |
gGGCCTATtgacc GGGCCTAttgacc gggCCTATTGAcc |
Disrupted Disrupted Disrupted |
N N N |
-0.045 -0.129 0.07 |
G |
hsa-miR-421 hsa-miR-4709-5p hsa-miR-505-3p |
2 2 2 |
gggcCTGTTGAcc gggcCTGTTGAcc gggccTGTTGACc |
Created Created Created |
N N N |
0.138 0.09 0.096 |
|||
72013545 | rs188494077 | T | T |
hsa-miR-4666b hsa-miR-5011-3p hsa-miR-6076 hsa-miR-6797-3p |
7 7 1 1 |
aaatCATGCAAtg aaatCATGCAAtg aaaTCATGCAatg aaaTCATGCAatg |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
-0.172 -0.17 -0.178 -0.188 |
C |
hsa-miR-6821-5p |
7 |
aaatCACGCAAtg |
Created |
N |
-0.264 |
|||
72013548 | rs71479428 | A | A |
hsa-miR-4317 hsa-miR-4666b hsa-miR-5011-3p hsa-miR-6076 hsa-miR-6797-3p |
10 7 7 1 1 |
tcatGCAATGAgc tCATGCAAtgagc tCATGCAAtgagc TCATGCAatgagc TCATGCAatgagc |
Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N |
-0.147 -0.172 -0.17 -0.178 -0.188 |
C |
hsa-miR-3622b-5p hsa-miR-6847-3p |
7 22 |
tCATGCCAtgagc tcatgcCATGAGC |
Created Created |
N N |
-0.197 -0.244 |
|||
72013549 | rs145644739 | A | A |
hsa-miR-4317 hsa-miR-4666b hsa-miR-5011-3p hsa-miR-6847-3p |
5 7 7 7 |
catGCAATGAgca CATGCAAtgagca CATGCAAtgagca catgcaATGAGCA |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
-0.147 -0.172 -0.17 -0.152 |
G |
hsa-miR-1178-3p hsa-miR-1304-3p hsa-miR-217 hsa-miR-6807-3p hsa-miR-6890-3p |
6 4 3 3 5 |
catgcaGTGAGCA catgCAGTGAGca cATGCAGTgagca cATGCAGTgagca catGCAGTGAgca |
Created Created Created Created Created |
N N N N N |
-0.294 -0.194 -0.186 -0.196 -0.153 |