SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000745 |
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Gene Symbol: | CHRNA5 |
Description: | Homo sapiens cholinergic receptor, nicotinic, alpha 5 (CHRNA5), mRNA. |
Gene Location: | chr15(+):78857861-78887611 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr15:g.78593399G>A | COSN8176887 | ASHPC_0017_Pa_P | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1246 |
ttaacagatAATCCATTtg |
0 | AAUGGAUU | m8a | (m7b->m8a) | no TS | -0.187000 |
-1.730000 |
|
hsa-miR-452-3p |
ttaaCAGATGAtccatttg |
0 | CUCAUCUG | m7b | Disrupted | -0.205000 | no TS |
0.530000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr15:g.78594416T>C | ICGC_8A8D2172-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-125a-3p |
tggctcaCACCTGTaatcc |
0 | ACAGGUGA | m7a | Created | -0.164 | -0.164 | No effect | |
hsa-miR-3934 |
tggctcACACCTGtaatcc |
0 | UCAGGUGU | m7b | Created | -0.188 | -0.269 | No effect | |
hsa-miR-552 |
tggctcaCACCTGTaatcc |
0 | AACAGGUG | m7b | Created | -0.503 | -0.636 | No effect | |
hsa-miR-5683 |
tggctcaCATCTGTAatcc |
2 |
UACAGAUG | m8a | Disrupted | -0.069 | no TS | No effect | |
hsa-miR-576-3p |
tggctCACATCTgtaatcc |
2 |
AAGAUGUG | m7b | Disrupted | -0.021 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr15:g.78594426A>C | ICGC_8A8D2636-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-204-3p |
ctgtaaTCCCAGCactttg |
0 | GCUGGGAA | m7a | Created | NA | NA |
-0.4 |
|
hsa-miR-5004-3p |
ctgtAATCCAAGcactttg |
2 |
CUUGGAUU | m8a | Disrupted | 0.026 | no TS |
1.13 |
|
hsa-miR-5089 |
ctgtAATCCCAgcactttg |
0 | GUGGGAUU | m7b | Created | -0.049 | -0.05 | No effect | |
hsa-miR-512-3p |
ctgtaatccCAGCACTTtg |
0 | AAGUGCUG | m8a | (m7b->m8a) | -0.066 | -0.086 |
3.26 |
|
hsa-miR-520f |
ctgtaatccAAGCACTTtg |
0 | AAGUGCUU | m8a | (m8a->m7b) | -0.03 | no TS |
2.55 |
|
hsa-miR-5589-5p |
ctgtaatCCCAGCactttg |
0 | GGCUGGGU | m6b | Created | -0.119 | -0.208 |
-2.86 |
|
hsa-miR-636 |
ctgtaatcCAAGCACtttg |
0 | UGUGCUUG | m7b | Disrupted | -0.022 | no TS |
7.47 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr15:g.78594501G>A | ICGC_C88EB896-2A78-11E2-BDED-1EFD496BB9B8 | CPCG_0103_Pr_P_P4 | ProstateCancer(OICR,CA) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-193b-5p |
catggtgAAACCCCGtctc |
0 | CGGGGUUU | m8a | Created | -0.193 | -0.235 | No effect | |
hsa-miR-412 |
catGGTGAAGccccgtctc |
2 |
ACUUCACC | m7b | (m7b->m6b) | -0.078 | no TS |
-0.74 |
|
hsa-miR-4508 |
catggtgaAGCCCCGtctc |
0 | GCGGGGCU | m7b | Disrupted | -0.215 | no TS | No effect | |
hsa-miR-5096 |
catGGTGAAACcccgtctc |
0 | GUUUCACC | m8a | Created | -0.06 | -0.201 |
-1.25 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr15:g.78594572A>G | ICGC_8A8D2C58-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1200 |
agctaCTCAGGAGgctgag |
0 | CUCCUGAG | m8a | Created | no TS | -0.066 |
-0.16 |
|
hsa-miR-2682-3p |
agctactcAAGAGGCtgag |
0 | CGCCUCUU | m7b | Disrupted | -0.086 | no TS |
1.97 |
|
hsa-miR-4324 |
agctaCTCAGGaggctgag |
0 | CCCUGAGA | m6b | Created | no TS | -0.022 |
6.93 |
|
hsa-miR-526b-5p |
agctaCTCAAGAGgctgag |
2 |
CUCUUGAG | m8a | Disrupted | -0.024 | no TS |
0.94 |
|
hsa-miR-544b |
agctaCTCAGGaggctgag |
0 | ACCUGAGG | m6b | Created | no TS | -0.013 | No effect | |
hsa-miR-660-3p |
agctactCAGGAGGctgag |
0 | ACCUCCUG | m7b | Created | no TS | -0.097 |
-6.97 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr15:g.78594765T>C | COSN5756803 | HX28T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-194-5p |
acaCTGTTACAtacctgta |
6 |
UGUAACAG | m8a | Created | -0.248000 | -0.489000 |
-0.120000 |
|
hsa-miR-379-3p |
acactGTTACATAcctgta |
0 | UAUGUAAC | m8a | Created | no TS | -0.140000 |
-0.360000 |
|
hsa-miR-410 |
acactGTTATATacctgta |
3 |
AAUAUAAC | m7b | Disrupted | -0.081000 | -0.041000 |
-0.340000 |
|
hsa-miR-411-3p |
acactGTTACATAcctgta |
0 | UAUGUAAC | m8a | Created | no TS | -0.140000 |
-1.510000 |
|
hsa-miR-4495 |
acactgTTACATacctgta |
0 | AAUGUAAA | m6b | Created | no TS | 0.025000 |
-0.070000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr15:g.78595096T>G | COSN6642913 | CHC322T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
78593545 | rs199612620 | C | C |
hsa-miR-3691-5p hsa-miR-376b-5p hsa-miR-376c-5p hsa-miR-4318 hsa-miR-4693-5p hsa-miR-4752 hsa-miR-7114-5p hsa-miR-8056 hsa-miR-892a |
2 2 2 2 2 2 2 2 2 |
aATCCACAgtaaa aATCCACAgtaaa aATCCACAgtaaa aatCCACAGTAaa aatcCACAGTAAa aATCCACAgtaaa aaTCCACAGtaaa AATCCACAgtaaa aatcCACAGTAaa |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N N |
-0.15 -0.16 -0.16 -0.428 -0.29 -0.234 -0.259 -0.37 -0.14 |
T |
hsa-miR-1246 |
2 |
AATCCATAgtaaa |
Created |
N |
-0.304 |
|||
78593870 | rs200751877 | G | G |
hsa-miR-483-5p |
2 |
aacCCCGTCTcta |
Disrupted |
N |
-0.177 |
A |
hsa-miR-1273f hsa-miR-193b-5p hsa-miR-3170 hsa-miR-6855-5p hsa-miR-6890-5p |
2 2 2 2 2 |
aaccCCATCTCta AACCCCAtctcta AACCCCAtctcta AACCCCAtctcta aACCCCATctcta |
Created Created Created Created Created |
N N N N N |
-0.108 -0.127 -0.148 -0.139 -0.175 |
|||
78594506 | rs55989223 | G | G |
hsa-miR-4508 hsa-miR-483-5p |
2 2 |
AGCCCCGtctcta agcCCCGTCTcta |
Disrupted Disrupted |
N N |
-0.215 -0.134 |
A |
hsa-miR-1273f hsa-miR-185-3p hsa-miR-3675-5p hsa-miR-4283 hsa-miR-4489 |
2 2 2 2 2 |
agccCCATCTCta AGCCCCAtctcta aGCCCCATctcta AGCCCCAtctcta AGCCCCAtctcta |
Created Created Created Created Created |
N N N N N |
-0.063 -0.121 -0.193 -0.137 -0.143 |
|||
78594576 | rs144907889 | G | G |
hsa-miR-2682-3p hsa-miR-6781-3p hsa-miR-6819-3p hsa-miR-6877-3p |
2 2 2 2 |
cAAGAGGCtgagg cAAGAGGCtgagg caAGAGGCTgagg caAGAGGCTgagg |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
-0.086 -0.048 -0.068 -0.105 |
T |
hsa-miR-4494 hsa-miR-499b-5p |
2 2 |
caagAGTCTGAgg caagAGTCTGAgg |
Created Created |
N N |
-0.03 -0.033 |