SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000079 |
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Gene Symbol: | CHRNA1 |
Description: | Homo sapiens cholinergic receptor, nicotinic, alpha 1 (muscle) (CHRNA1), transcript variant 2, mRNA. |
Gene Location: | chr2(-):175612322-175629200 |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.174747706T>C | COSN7147408 | 8066452 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1323 |
aagagtcAGTTTTGtacct |
6 |
UCAAAACU | m7b | Disrupted | -0.074000 | no TS |
5.340000 |
hsa-miR-320a |
aagagtCAGCTTTgtacct |
0 | AAAAGCUG | m7b | Created | no TS | -0.156000 |
-1.030000 |
hsa-miR-320b |
aagagtCAGCTTTgtacct |
0 | AAAAGCUG | m7b | Created | no TS | -0.156000 |
-1.030000 |
hsa-miR-320c |
aagagtCAGCTTTgtacct |
0 | AAAAGCUG | m7b | Created | no TS | -0.156000 |
-1.030000 |
hsa-miR-320d |
aagagtCAGCTTTgtacct |
0 | AAAAGCUG | m7b | Created | no TS | -0.156000 |
-1.030000 |
hsa-miR-345-5p |
aaGAGTCAGCtttgtacct |
1 |
GCUGACUC | m8a | (m7b->m8a) | -0.291000 | -0.263000 |
1.800000 |
hsa-miR-4429 |
aagagtCAGCTTTgtacct |
0 | AAAAGCUG | m7b | Created | no TS | -0.156000 |
-1.030000 |
hsa-miR-520d-5p |
aagagtcagCTTTGTAcct |
0 | CUACAAAG | m7b | (m6b->m7b) | no TS | -0.030000 |
-0.960000 |
hsa-miR-524-5p |
aagagtcagCTTTGTAcct |
0 | CUACAAAG | m7b | (m6b->m7b) | no TS | -0.030000 |
-0.430000 |
hsa-miR-548a-3p |
aagagtCAGTTTTGtacct |
6 |
CAAAACUG | m8a | Disrupted | -0.104000 | no TS |
6.120000 |
hsa-miR-548ar-3p |
aagagtCAGTTTTgtacct |
6 |
UAAAACUG | m7b | Disrupted | -0.095000 | no TS |
0.010000 |
hsa-miR-548e |
aagagtCAGTTTTgtacct |
6 |
AAAAACUG | m7b | Disrupted | -0.085000 | no TS |
3.190000 |
hsa-miR-548f |
aagagtCAGTTTTgtacct |
6 |
AAAAACUG | m7b | Disrupted | -0.095000 | no TS |
5.490000 |
hsa-miR-548o-3p |
aagagtcAGTTTTGtacct |
6 |
CCAAAACU | m7b | Disrupted | -0.093000 | no TS |
5.330000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
174747702 | rs184095877 | G | G |
hsa-miR-1323 hsa-miR-548o-3p |
6 6 |
AGTTTTGtaccta AGTTTTGtaccta |
Disrupted Disrupted |
N N |
-0.074 -0.093 |
T |
hsa-miR-548ae hsa-miR-548ah-3p hsa-miR-548aj-3p hsa-miR-548am-3p hsa-miR-548aq-3p hsa-miR-548j-3p hsa-miR-548x-3p |
6 6 6 6 6 6 6 |
AGTTTTTtaccta AGTTTTTtaccta AGTTTTTtaccta AGTTTTTtaccta AGTTTTTtaccta AGTTTTTtaccta AGTTTTTtaccta |
Created Created Created Created Created Created Created |
N N N N N N N |
-0.034 -0.034 -0.034 -0.034 -0.034 -0.025 -0.034 |