SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_000079
Gene Symbol: CHRNA1
Description: Homo sapiens cholinergic receptor, nicotinic, alpha 1 (muscle) (CHRNA1), transcript variant 2, mRNA.
Gene Location: chr2(-):175612322-175629200
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr2:g.174747706T>C COSN7147408 8066452 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1323 aagagtcAGTTTTGtacct
6
UCAAAACU m7b Disrupted -0.074000 no TS 5.340000
hsa-miR-320a aagagtCAGCTTTgtacct
0 AAAAGCUG m7b Created no TS -0.156000 -1.030000
hsa-miR-320b aagagtCAGCTTTgtacct
0 AAAAGCUG m7b Created no TS -0.156000 -1.030000
hsa-miR-320c aagagtCAGCTTTgtacct
0 AAAAGCUG m7b Created no TS -0.156000 -1.030000
hsa-miR-320d aagagtCAGCTTTgtacct
0 AAAAGCUG m7b Created no TS -0.156000 -1.030000
hsa-miR-345-5p aaGAGTCAGCtttgtacct
1
GCUGACUC m8a (m7b->m8a) -0.291000 -0.263000 1.800000
hsa-miR-4429 aagagtCAGCTTTgtacct
0 AAAAGCUG m7b Created no TS -0.156000 -1.030000
hsa-miR-520d-5p aagagtcagCTTTGTAcct
0 CUACAAAG m7b (m6b->m7b) no TS -0.030000 -0.960000
hsa-miR-524-5p aagagtcagCTTTGTAcct
0 CUACAAAG m7b (m6b->m7b) no TS -0.030000 -0.430000
hsa-miR-548a-3p aagagtCAGTTTTGtacct
6
CAAAACUG m8a Disrupted -0.104000 no TS 6.120000
hsa-miR-548ar-3p aagagtCAGTTTTgtacct
6
UAAAACUG m7b Disrupted -0.095000 no TS 0.010000
hsa-miR-548e aagagtCAGTTTTgtacct
6
AAAAACUG m7b Disrupted -0.085000 no TS 3.190000
hsa-miR-548f aagagtCAGTTTTgtacct
6
AAAAACUG m7b Disrupted -0.095000 no TS 5.490000
hsa-miR-548o-3p aagagtcAGTTTTGtacct
6
CCAAAACU m7b Disrupted -0.093000 no TS 5.330000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
174747702 rs184095877 G G hsa-miR-1323
hsa-miR-548o-3p
6
6
AGTTTTGtaccta
AGTTTTGtaccta
Disrupted
Disrupted
N
N
-0.074
-0.093
T hsa-miR-548ae
hsa-miR-548ah-3p
hsa-miR-548aj-3p
hsa-miR-548am-3p
hsa-miR-548aq-3p
hsa-miR-548j-3p
hsa-miR-548x-3p
6
6
6
6
6
6
6
AGTTTTTtaccta
AGTTTTTtaccta
AGTTTTTtaccta
AGTTTTTtaccta
AGTTTTTtaccta
AGTTTTTtaccta
AGTTTTTtaccta
Created
Created
Created
Created
Created
Created
Created
N
N
N
N
N
N
N
-0.034
-0.034
-0.034
-0.034
-0.034
-0.025
-0.034

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