SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
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Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

RefSeq ID:	NM_005483
Gene Symbol:	CHAF1A
Description:	Homo sapiens chromatin assembly factor 1, subunit A (p150) (CHAF1A), mRNA.
Gene Location:	chr19(+):4402659-4443394
Browse Associations

Somatic mutations that impact miRNA target sites

Mutation			Mutation ID		Sample Name		Cancer Type
chr19:g.4443049T>C			COSN522718		TCGA-BH-A0W4-01		[breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-1179	tatgtaGAATGCTTagggt	0	AAGCAUUC	m8a	Disrupted	-0.191000	no TS	0.220000
hsa-miR-1179	tatgtaGAATGCTTagggt	0	AAGCAUUC	m8a	Disrupted	-0.191000	no TS	0.220000

Mutation			Mutation ID		Sample Name		Cancer Type
chr19:g.4443095T>A			COSN1082400		TCGA-D1-A15X-01		[endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Germline mutations in target sites of miRNAs in somatic mutation table

Location	SNP ID	Ancestral Allele	Allele	miR ID	Conservation	miRSite	FuncClass	Validation	context+ score change
4443049	rs2992	C	T	hsa-miR-1179	0	gtaGAATGCTtag	Created	N	-0.191

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