SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_000078
Gene Symbol: CETP
Description: Homo sapiens cholesteryl ester transfer protein, plasma (CETP), mRNA.
Gene Location: chr16(+):56995834-57017756

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr16:g.56983778G>A COSN1188261 HCC33T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-136-5p gagtacggaAATGGAGatt
1
ACUCCAUU m7b (m6c->m7b) -0.095000 -0.251000 -1.220000
hsa-miR-3605-3p gagtACGGAGatggagatt
0 CCUCCGUG m6b Disrupted -0.199000 no TS 7.390000
hsa-miR-136-5p gagtacggaAATGGAGatt
1
ACUCCAUU m7b (m6c->m7b) -0.095000 -0.251000 -1.220000
hsa-miR-3605-3p gagtACGGAGatggagatt
0 CCUCCGUG m6b Disrupted -0.199000 no TS 7.390000
hsa-miR-136-5p gagtacggaAATGGAGatt
0 ACUCCAUU m7b (m6c->m7b) -0.095 -0.251 -1.22
hsa-miR-3605-3p gagtACGGAGatggagatt
0 CCUCCGUG m6b Disrupted -0.199 no TS 7.39

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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