SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_000077 |
---|---|
Gene Symbol: | CDKN2A |
Description: | Homo sapiens cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) (CDKN2A), transcript variant 1, mRNA. |
Gene Location: | chr9(-):21967750-21975132 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.21968200G>C | COSN14880215 | CHC320T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1203 |
agaaacCTCCGGaaactta |
0 | CCCGGAGC | m6b | Created | -0.218000 | -0.484000 |
-0.270000 |
hsa-miR-4664-3p |
agaaacctCCGGAAactta |
0 | CUUCCGGU | m6b | Created | no TS | -0.248000 |
-0.010000 |
hsa-miR-4740-3p |
agaaacCTCGGGaaactta |
0 | GCCCGAGA | m6b | Disrupted | -0.240000 | no TS |
0.360000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
21968200 | rs11515 | C | G |
hsa-miR-4740-3p |
0 |
aacCTCGGGAaac |
Created |
N |
-0.24 |
C |
hsa-miR-1180-3p hsa-miR-1203 hsa-miR-4664-3p |
0 |
aacctCCGGAAAc aacCTCCGGAaac aacctCCGGAAAc |
Disrupted Disrupted Disrupted |
N N N |
-0.235 -0.266 -0.248 |