SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_004064
Gene Symbol: CDKN1B
Description: Homo sapiens cyclin-dependent kinase inhibitor 1B (p27, Kip1) (CDKN1B), mRNA.
Gene Location: chr12(+):12870301-12875305
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.12721201T>C ICGC_ssm_v3_143323 HCC77T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4693-3p aggCACTCTCAaatgatct
 0 UGAGAGUG m8a Created no TS -0.372 -0.06
hsa-miR-5696 aggcactctTAAATGAtct
 0 CUCAUUUA m7b (m7b->m6c) -0.057 -0.013 3.94
hsa-miR-579 aggcactctCAAATGAtct
 0 UUCAUUUG m7b (m6c->m7b) -0.019 -0.083 -1.93
hsa-miR-644b-3p aggcactctCAAATGAtct
 0 UUCAUUUG m7b (m6c->m7b) -0.013 -0.096 -1.65

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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