SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_017774 |
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Gene Symbol: | CDKAL1 |
Description: | Homo sapiens CDK5 regulatory subunit associated protein 1-like 1 (CDKAL1), mRNA. |
Gene Location: | chr6(+):20534687-21232634 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.21231109C>T | COSN167702 | GC8_T | [stomach][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3124-3p |
acAGGAAAGTgacatctcc |
4 |
ACUUUCCU | m8a | (m7a->m8a) | -0.123000 | -0.151000 |
0.110000 |
hsa-miR-4315 |
acagGAAAGCGacatctcc |
1 |
CCGCUUUC | m7b | Disrupted | -0.440000 | no TS |
2.090000 |
hsa-miR-4790-5p |
acaggAAAGCGAcatctcc |
1 |
AUCGCUUU | m7b | Disrupted | -0.259000 | no TS |
2.100000 |
hsa-miR-3124-3p |
acAGGAAAGTgacatctcc |
0 | ACUUUCCU | m8a | (m7a->m8a) | -0.123 | -0.151 |
0.11 |
hsa-miR-4315 |
acagGAAAGCGacatctcc |
1 |
CCGCUUUC | m7b | Disrupted | -0.44 | no TS |
2.09 |
hsa-miR-4790-5p |
acaggAAAGCGAcatctcc |
1 |
AUCGCUUU | m7b | Disrupted | -0.259 | no TS |
2.1 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.21231169A>C | COSN8314804 | TCGA-A8-A0A6-01 | [breast][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-185-3p |
ttctCAGCCCCTcttctta |
0 | AGGGGCUG | m8a | Created | no TS | -0.239000 |
-0.010000 |
hsa-miR-3184-5p |
ttctcaGCCCCTCttctta |
0 | UGAGGGGC | m7b | Created | no TS | -0.304000 |
-1.350000 |
hsa-miR-423-5p |
ttctcaGCCCCTCttctta |
0 | UGAGGGGC | m7b | Created | no TS | -0.304000 |
-4.240000 |
hsa-miR-4656 |
ttcTCAGCCCctcttctta |
2 |
UGGGCUGA | m7b | (m6b->m7b) | -0.185000 | -0.444000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.21231528A>G | ICGC_9FF0C492-2A78-11E2-8335-12FD496BB9B8 | CPCG_0102_Pr_P_P2 | ProstateCancer(OICR,CA) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-5707 |
tgggtTCAAACGattctcc |
2 |
ACGUUUGA | m7b | Disrupted | -0.259 | no TS |
0.21 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.21231697A>G | ICGC_7A2313A0-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4530 |
caaagTGCTGGGattacag |
0 | CCCAGCAG | m7a | Created | NA | NA |
-0.1 |
hsa-miR-4733-5p |
caaagtgcTGGGATTacag |
0 | AAUCCCAA | m7a | Created | NA | NA |
-0.01 |