SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_052988
Gene Symbol: CDK10
Description: Homo sapiens cyclin-dependent kinase 10 (CDK10), transcript variant c, mRNA.
Gene Location: chr16(+):89753075-89762772
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr16:g.89696328T>G COSN1712537 RK061_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-335-5p tatagGCTCTTGttggata
 2
 UCAAGAGC m7b Disrupted -0.195000 no TS -4.780000
hsa-miR-335-5p tatagGCTCTTGttggata
 2
 UCAAGAGC m7b Disrupted -0.195000 no TS -4.780000

Mutation Mutation ID Sample Name Cancer Type
chr16:g.89696351C>A COSN1192599 BN31T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-511 cttttttaAAAGACAtggt
 0 GUGUCUUU m7b Created no TS -0.190000 -0.210000
hsa-miR-654-3p cttttttaaCAGACATggt
 2
 UAUGUCUG m7b (m7b->m6c) -0.228000 no TS 0.400000
hsa-miR-511 cttttttaAAAGACAtggt
 0 GUGUCUUU m7b Created no TS -0.190000 -0.210000
hsa-miR-654-3p cttttttaaCAGACATggt
 2
 UAUGUCUG m7b (m7b->m6c) -0.228000 no TS 0.400000
hsa-miR-511 cttttttaAAAGACAtggt
 0 GUGUCUUU m7b Created no TS -0.19 -0.21
hsa-miR-654-3p cttttttaaCAGACATggt
 0 UAUGUCUG m7b (m7b->m6c) -0.228 no TS 0.4

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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