SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001220490 |
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Gene Symbol: | CDH13 |
Description: | Homo sapiens cadherin 13, H-cadherin (heart) (CDH13), transcript variant 2, mRNA. |
Gene Location: | chr16(+):82660398-83830215 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr16:g.83795041C>T | COSN4892787 | PCSI_0021_Pa_X | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1324 |
aactcctgaTGTCTGaagc |
0 | CCAGACAG | m6b | Created | no TS | 0.000000 | No effect |
hsa-miR-3913-3p |
aactccTGATGTCTgaagc |
0 | AGACAUCA | m8a | Created | no TS | 0.000000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr16:g.83795243T>A | COSN9654041 | C0051T | [kidney][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4699-5p |
ggAATCTTCTgaattttcc |
3 |
AGAAGAUU | m8a | (m8a->m7a) | -0.111000 | -0.203000 |
1.650000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr16:g.83796020G>A | COSN7275997 | 8031556 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4302 |
cacattCACACTGtttgtt |
0 | CCAGUGUG | m7b | Created | no TS | -0.202000 |
-0.120000 |