SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001220489
Gene Symbol: CDH13
Description: Homo sapiens cadherin 13, H-cadherin (heart) (CDH13), transcript variant 2, mRNA.
Gene Location: chr16(+):82660398-83830215
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr16:g.83795041C>T COSN4892787 PCSI_0021_Pa_X [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1324 aactcctgaTGTCTGaagc
 0 CCAGACAG m6b Created no TS 0.000000 No effect
hsa-miR-3913-3p aactccTGATGTCTgaagc
 0 AGACAUCA m8a Created no TS 0.000000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr16:g.83795243T>A COSN9654041 C0051T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4699-5p ggAATCTTCTgaattttcc
 3
 AGAAGAUU m8a (m8a->m7a) -0.111000 -0.203000 1.650000

Mutation Mutation ID Sample Name Cancer Type
chr16:g.83796020G>A COSN7275997 8031556 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4302 cacattCACACTGtttgtt
 0 CCAGUGUG m7b Created no TS -0.202000 -0.120000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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