SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001250
Gene Symbol: CD40
Description: Homo sapiens CD40 molecule, TNF receptor superfamily member 5 (CD40), transcript variant 1, mRNA.
Gene Location: chr20(+):44746905-44758384
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr20:g.46129685C>A COSN1249518 HCC82T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4652-3p ggaagggtaAACAGAAaac
 4
 GUUCUGUU m7b (m6c->m7b) -0.168000 -0.325000 -2.880000
hsa-miR-4652-3p ggaagggtaAACAGAAaac
 0 GUUCUGUU m7b (m6c->m7b) -0.168 -0.325 -2.88

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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