SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001229 |
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Gene Symbol: | CASP9 |
Description: | Homo sapiens caspase 9, apoptosis-related cysteine peptidase (CASP9), transcript variant alpha, mRNA. |
Gene Location: | chr1(-):15818768-15850940 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.15492437G>T | COSN1408142 | RK061_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4668-3p |
gtctgtagGGATTTTtggc |
3 |
GAAAAUCC | m7b | Disrupted | -0.001000 | no TS | No effect |
hsa-miR-548c-3p |
gtctgtaggGATTTTTGgc |
3 |
CAAAAAUC | m8a | (m8a->m7a) | 0.103000 | no TS | No effect |
hsa-miR-605 |
gtctgtaGGGATTTttggc |
3 |
UAAAUCCC | m7b | Disrupted | -0.162000 | no TS |
-0.510000 |
hsa-miR-4668-3p |
gtctgtagGGATTTTtggc |
3 |
GAAAAUCC | m7b | Disrupted | -0.001000 | no TS | No effect |
hsa-miR-548c-3p |
gtctgtaggGATTTTTGgc |
3 |
CAAAAAUC | m8a | (m8a->m7a) | 0.103000 | no TS | No effect |
hsa-miR-605 |
gtctgtaGGGATTTttggc |
3 |
UAAAUCCC | m7b | Disrupted | -0.162000 | no TS |
-0.510000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.15492438G>A | COSN1408144 | RK061_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-216b |
ggtctgtAGAGATTTttgg |
0 | AAAUCUCU | m8a | Created | no TS | -0.131000 |
-1.940000 |
hsa-miR-3675-3p |
ggtctgTAGAGATttttgg |
0 | CAUCUCUA | m7b | Created | no TS | -0.105000 |
-1.950000 |
hsa-miR-4668-3p |
ggtctgtagGGATTTTtgg |
3 |
GAAAAUCC | m7b | (m7b->m6b) | -0.001000 | no TS | No effect |
hsa-miR-4684-5p |
ggtctGTAGAGAtttttgg |
0 | CUCUCUAC | m7b | Created | no TS | -0.171000 |
-1.910000 |
hsa-miR-605 |
ggtctgtaGGGATTTttgg |
3 |
UAAAUCCC | m7b | Disrupted | -0.162000 | no TS |
-0.510000 |
hsa-miR-216b |
ggtctgtAGAGATTTttgg |
0 | AAAUCUCU | m8a | Created | no TS | -0.131000 |
-1.940000 |
hsa-miR-3675-3p |
ggtctgTAGAGATttttgg |
0 | CAUCUCUA | m7b | Created | no TS | -0.105000 |
-1.950000 |
hsa-miR-4668-3p |
ggtctgtagGGATTTTtgg |
3 |
GAAAAUCC | m7b | (m7b->m6b) | -0.001000 | no TS | No effect |
hsa-miR-4684-5p |
ggtctGTAGAGAtttttgg |
0 | CUCUCUAC | m7b | Created | no TS | -0.171000 |
-1.910000 |
hsa-miR-605 |
ggtctgtaGGGATTTttgg |
3 |
UAAAUCCC | m7b | Disrupted | -0.162000 | no TS |
-0.510000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.15492931C>A | COSN8644654 | AOCS-116-1-3 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1914-3p |
ccagggCCCCTCaccctgc |
5 |
GGAGGGGU | m6b | Disrupted | 0.000000 | no TS | No effect |
hsa-miR-3184-5p |
ccaggGCCCCTCAccctgc |
4 |
UGAGGGGC | m8a | Disrupted | 0.000000 | no TS | No effect |
hsa-miR-423-5p |
ccaggGCCCCTCAccctgc |
4 |
UGAGGGGC | m8a | Disrupted | 0.000000 | no TS | No effect |
hsa-miR-4710 |
ccagggccCCTCACCCtgc |
5 |
GGGUGAGG | m8a | Disrupted | 0.000000 | no TS | No effect |