| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_001257119 |
|---|---|
| Gene Symbol: | CASP1 |
| Description: | Homo sapiens caspase 1, apoptosis-related cysteine peptidase (interleukin 1, beta, convertase) (CASP1), transcript variant beta, mRNA. |
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| Browse Pathways | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr11:g.105025563A>G | COSN5892586 | RK175_C01 | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr11:g.105025997T>A | COSN10076963 | C0058T | [kidney][NS][other][neoplasm] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-4742-3p |
accagtaagAATACAGctg |
0 | UCUGUAUU | m7b | (m6b->m7b) | -0.072000 | -0.163000 |
-0.760000 |
| hsa-miR-550b-3p |
accAGTAAGAatacagctg |
0 | UCUUACUC | m7a | (m6b->m7a) | no TS | -0.098000 | No effect |
| hsa-miR-630 |
accagtaAGAATACagctg |
0 | AGUAUUCU | m7b | Created | no TS | -0.241000 |
-0.080000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr11:g.105026230G>T | COSN1125709 | HCC34T | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-4722-3p |
atgtctgtgGGCAGGTaca |
0 | ACCUGCCA | m7a | (m7a->m6a) | NA | NA |
1.160000 |
| hsa-miR-4722-3p |
atgtctgtgGGCAGGTaca |
0 | ACCUGCCA | m7a | (m7a->m6a) | NA | NA |
1.160000 |
| hsa-miR-4722-3p |
atgtctgtgGGCAGGTaca |
0 | ACCUGCCA | m7a | (m7a->m6a) | NA | NA |
1.160000 |
| hsa-miR-4722-3p |
atgtctgtgGGCAGGTaca |
0 | ACCUGCCA | m7a | (m7a->m6a) | NA | NA |
1.16 |