SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_018014
Gene Symbol: BCL11A
Description: Homo sapiens B-cell CLL/lymphoma 11A (zinc finger protein) (BCL11A), transcript variant 2, mRNA.
Gene Location: chr2(-):60678301-60780633
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr2:g.60451997G>A COSN9382078 AOCS-166-1-2 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr2:g.60452131T>C 11_704 2542 Breast cancer
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-548c-3p ctttaATTTTTaatgctta
 0 CAAAAAUC m6b Disrupted 0.111 no TS 0.14
hsa-miR-5680 ctttaATTTCTaatgctta
 0 GAGAAAUG m6b Created no TS 0.018 -7.73

Mutation Mutation ID Sample Name Cancer Type
chr2:g.60452525C>T COSN1849524 RK027_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3913-3p cccagtcGATGTCagcgtg
 0 AGACAUCA m6b Created no TS -0.074000 -0.010000
hsa-miR-489 cccagtcGATGTCAgcgtg
 0 GUGACAUC m7b Created no TS -0.079000 0.310000
hsa-miR-3913-3p cccagtcGATGTCagcgtg
 0 AGACAUCA m6b Created no TS -0.074 -0.01
hsa-miR-489 cccagtcGATGTCAgcgtg
 0 GUGACAUC m7b Created no TS -0.079 0.31

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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