SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_021813 |
---|---|
Gene Symbol: | BACH2 |
Description: | Homo sapiens BTB and CNC homology 1, basic leucine zipper transcription factor 2 (BACH2), transcript variant 2, mRNA. |
Gene Location: | chr6(-):90636246-91006562 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.89926700G>A | COSN7902522 | 8048316 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1238 |
accttttgGAGGAAaaaag |
0 | CUUCCUCG | m6b | Created | no TS | -0.150000 | No effect | |
hsa-miR-361-3p |
acctttTGGGGGAaaaaag |
0 | UCCCCCAG | m7a | Disrupted | -0.272000 | -0.032000 |
1.580000 |
|
hsa-miR-3679-3p |
accttttGGGGGAAaaaag |
0 | CUUCCCCC | m7b | Disrupted | -0.575000 | -0.048000 |
2.710000 |
|
hsa-miR-4446-5p |
accttttggGGGAAAaaag |
0 | AUUUCCCU | m6b | Disrupted | -0.103000 | no TS | No effect | |
hsa-miR-4691-5p |
acctttTGGAGGAaaaaag |
0 | GUCCUCCA | m7b | Created | 0.042000 | -0.387000 |
-0.310000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.89927263A>C | COSN9915754 | C0023T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-183-5p |
cacgctcTGCCATAaagac |
18 |
UAUGGCAC | m7a | Created | -0.141000 | -0.210000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.89928789G>T | COSN4958788 | SS6003311 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-103a-3p |
gatgATGCTGCagtggaaa |
13 |
AGCAGCAU | m7b | Disrupted | -0.023000 | -0.074000 |
-0.030000 |
|
hsa-miR-107 |
gatgATGCTGCagtggaaa |
13 |
AGCAGCAU | m7b | Disrupted | -0.023000 | -0.074000 |
-0.010000 |
|
hsa-miR-1184 |
gatgatGCTGCAGtggaaa |
7 |
CCUGCAGC | m7b | Disrupted | -0.136000 | -0.075000 | No effect | |
hsa-miR-1273g-3p |
gatgatgctGCAGTGGaaa |
1 |
ACCACUGC | m7b | (m7b->m6b) | 0.062000 | 0.144000 |
1.970000 |
|
hsa-miR-181a-2-3p |
gatgatgctTCAGTGGaaa |
1 |
ACCACUGA | m7b | (m6b->m7b) | -0.041000 | -0.070000 |
-0.050000 |
|
hsa-miR-4310 |
gatgATGCTGCagtggaaa |
2 |
GCAGCAUU | m7a | Disrupted | 0.006000 | 0.006000 |
-0.010000 |
|
hsa-miR-4418 |
gatgatgCTGCAGTGgaaa |
16 |
CACUGCAG | m8a | Disrupted | 0.104000 | 0.064000 | No effect | |
hsa-miR-509-3-5p |
gatgatgCTGCAGTggaaa |
16 |
UACUGCAG | m7b | Disrupted | 0.114000 | 0.055000 | No effect | |
hsa-miR-509-5p |
gatgatgCTGCAGTggaaa |
16 |
UACUGCAG | m7b | Disrupted | 0.129000 | 0.061000 | No effect | |
hsa-miR-103a-3p |
gatgATGCTGCagtggaaa |
13 |
AGCAGCAU | m7b | Disrupted | -0.023000 | -0.074000 |
-0.030000 |
|
hsa-miR-107 |
gatgATGCTGCagtggaaa |
13 |
AGCAGCAU | m7b | Disrupted | -0.023000 | -0.074000 |
-0.010000 |
|
hsa-miR-1184 |
gatgatGCTGCAGtggaaa |
7 |
CCUGCAGC | m7b | Disrupted | -0.136000 | -0.075000 | No effect | |
hsa-miR-1273g-3p |
gatgatgctGCAGTGGaaa |
1 |
ACCACUGC | m7b | (m7b->m6b) | 0.062000 | 0.144000 |
1.970000 |
|
hsa-miR-181a-2-3p |
gatgatgctTCAGTGGaaa |
1 |
ACCACUGA | m7b | (m6b->m7b) | -0.041000 | -0.070000 |
-0.050000 |
|
hsa-miR-4310 |
gatgATGCTGCagtggaaa |
2 |
GCAGCAUU | m7a | Disrupted | 0.006000 | 0.006000 |
-0.010000 |
|
hsa-miR-4418 |
gatgatgCTGCAGTGgaaa |
16 |
CACUGCAG | m8a | Disrupted | 0.104000 | 0.064000 | No effect | |
hsa-miR-509-3-5p |
gatgatgCTGCAGTggaaa |
16 |
UACUGCAG | m7b | Disrupted | 0.114000 | 0.055000 | No effect | |
hsa-miR-509-5p |
gatgatgCTGCAGTggaaa |
16 |
UACUGCAG | m7b | Disrupted | 0.129000 | 0.061000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.89928936G>T | COSN8514915 | J46_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3910 |
gggTGCCTTTattaaaatc |
19 |
AAAGGCAU | m7a | (m6b->m7a) | -0.235000 | -0.235000 |
-0.920000 |
|
hsa-miR-4484 |
gggtGCCTTTattaaaatc |
1 |
AAAAGGCG | m6b | Created | 0.010000 | 0.027000 |
-0.020000 |
|
hsa-miR-548an |
gggTGCCTTTattaaaatc |
9 |
AAAAGGCA | m7b | (m6c->m7b) | 0.184000 | 0.262000 |
-0.150000 |
|
hsa-miR-5590-3p |
gggtgcCTTTATTaaaatc |
1 |
AAUAAAGU | m7a | Created | 0.101000 | 0.096000 |
-0.360000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.89929581G>T | COSN1338261 | HCC104T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-5197-5p |
ttcTGCCATTGgaactggt |
10 |
CAAUGGCA | m8a | Created | -0.030000 | 0.041000 |
-0.030000 |
|
hsa-miR-5197-5p |
ttcTGCCATTGgaactggt |
0 | CAAUGGCA | m8a | Created | -0.03 | 0.041 |
-0.03 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.89929682G>A | COSN14697919 | CHC433T | [liver][NS][carcinoma][hepatocellular_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1291 |
agcaggggCAGGGCCtctt |
0 | UGGCCCUG | m7b | Created | 0.017000 | -0.016000 |
-0.380000 |
|
hsa-miR-1913 |
agcaGGGGCAGggcctctt |
0 | UCUGCCCC | m7b | Created | -0.080000 | -0.117000 |
-0.040000 |
|
hsa-miR-3173-5p |
agcagggGCAGGGCctctt |
4 |
UGCCCUGC | m7b | Created | -0.130000 | -0.141000 |
-0.100000 |
|
hsa-miR-324-3p |
agcaGGGGCAGggcctctt |
0 | ACUGCCCC | m7b | Created | -0.070000 | -0.116000 |
-0.410000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.89931136C>T | COSN15411175 | 0064_CRUK_PC_0064_T1_DNA | [prostate][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1262 |
gaaagtttTCACCCAggga |
7 |
AUGGGUGA | m7b | Disrupted | -0.062000 | no TS |
0.040000 |
|
hsa-miR-4701-3p |
gaaagtttTCACCCAggga |
7 |
AUGGGUGA | m7b | Disrupted | -0.034000 | no TS | No effect | |
hsa-miR-548ac |
gaaaGTTTTTacccaggga |
0 | CAAAAACC | m6b | Created | 0.263000 | 0.436000 | No effect | |
hsa-miR-548ae |
gaaAGTTTTTacccaggga |
0 | CAAAAACU | m7b | (m6c->m7b) | 0.031000 | 0.237000 | No effect | |
hsa-miR-548ah-3p |
gaaAGTTTTTacccaggga |
0 | CAAAAACU | m7b | (m6c->m7b) | 0.031000 | 0.237000 | No effect | |
hsa-miR-548aj-3p |
gaaAGTTTTTAcccaggga |
0 | UAAAAACU | m8a | Created | 0.031000 | 0.237000 | No effect | |
hsa-miR-548am-3p |
gaaAGTTTTTacccaggga |
0 | CAAAAACU | m7b | (m6c->m7b) | 0.031000 | 0.237000 | No effect | |
hsa-miR-548aq-3p |
gaaAGTTTTTacccaggga |
0 | CAAAAACU | m7b | (m6c->m7b) | 0.031000 | 0.237000 | No effect | |
hsa-miR-548d-3p |
gaaaGTTTTTacccaggga |
0 | CAAAAACC | m6b | Created | 0.284000 | 0.453000 | No effect | |
hsa-miR-548e |
gaaAGTTTTTacccaggga |
16 |
AAAAACUG | m7a | (m6b->m7a) | 0.016000 | 0.016000 | No effect | |
hsa-miR-548f |
gaaAGTTTTTacccaggga |
16 |
AAAAACUG | m7a | (m6b->m7a) | 0.016000 | 0.016000 |
-0.010000 |
|
hsa-miR-548h-3p |
gaaaGTTTTTacccaggga |
0 | CAAAAACC | m6b | Created | 0.263000 | 0.432000 | No effect | |
hsa-miR-548x-3p |
gaaAGTTTTTAcccaggga |
0 | UAAAAACU | m8a | Created | 0.031000 | 0.237000 | No effect | |
hsa-miR-548z |
gaaaGTTTTTacccaggga |
0 | CAAAAACC | m6b | Created | 0.263000 | 0.432000 | No effect | |
hsa-miR-555 |
gaaagtttTTACCCaggga |
0 | AGGGUAAG | m6b | Created | no TS | -0.014000 |
-6.930000 |
|
hsa-miR-570-3p |
gaaaGTTTTCacccaggga |
4 |
CGAAAACA | m6b | Disrupted | 0.155000 | 0.028000 |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.89931229C>T | COSN2182655 | RK052_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1273f |
tttggaCATCTCactcaaa |
7 |
GGAGAUGG | m6b | Disrupted | 0.050000 | 0.001000 | No effect | |
hsa-miR-203 |
tttggaCATTTCACtcaaa |
0 | GUGAAAUG | m8a | Created | 0.157000 | 0.226000 |
-0.230000 |
|
hsa-miR-2964a-5p |
tttGGACATCTcactcaaa |
0 | AGAUGUCC | m8a | Disrupted | -0.087000 | 0.024000 |
0.170000 |
|
hsa-miR-4708-5p |
tttggaCATCTCactcaaa |
7 |
AGAGAUGC | m6b | Disrupted | 0.079000 | 0.058000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.89931296C>T | COSN14716798 | CHC433T | [liver][NS][carcinoma][hepatocellular_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-20a-3p |
aagtttaAATGCAGataga |
0 | ACUGCAUU | m7b | Created | no TS | -0.097000 |
-4.830000 |
|
hsa-miR-4520a-5p |
aagtttaaACGCAGataga |
0 | CCUGCGUG | m6b | Disrupted | -0.128000 | no TS |
2.180000 |
|
hsa-miR-4520b-5p |
aagtttaaACGCAGataga |
0 | CCUGCGUG | m6b | Disrupted | -0.128000 | no TS |
2.180000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.89931609T>G | COSN7902523 | 8044594 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.89931839G>T | COSN5092152 | HX24T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3123 |
tcttcttttTTCTCTGatg |
16 |
CAGAGAAU | m7a | (m6a->m7a) | -0.074000 | -0.074000 |
-0.140000 |
hsa-miR-3919 |
tcttcttttTTCTCTGatg |
16 |
GCAGAGAA | m7b | (m6b->m7b) | -0.192000 | -0.331000 |
0.100000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
89926697 | rs199872327 | - | - |
hsa-miR-361-3p hsa-miR-3679-3p hsa-miR-4446-5p |
4 9 14 |
TGGGGGAaaaaag tGGGGGAAAaaag tggGGGAAAAaag |
Unknown Unknown Unknown |
N N N |
0.001 0.005 0.005 |
A | |||||||||
89926698 | rs200683305 | A | G |
hsa-miR-361-3p hsa-miR-3679-3p hsa-miR-4446-5p |
4 9 14 |
tTGGGGGAaaaaa ttGGGGGAAAaaa ttggGGGAAAAaa |
Created Created Created |
N N N |
-0.24 -0.325 0.014 |
A |
hsa-miR-2355-5p hsa-miR-6793-3p |
4 3 |
tTGGGGAAaaaaa TTGGGGAaaaaaa |
Disrupted Disrupted |
N N |
-0.198 -0.17 |
|||
89928121 | rs145744018 | - | - |
hsa-miR-570-3p |
0 |
gttttTGTTTTCtaagaataaag |
Unknown |
N |
0.001 |
TGTTTT | |||||||||
89928121 | rs58386073 | T | C |
hsa-miR-570-3p |
0 |
TGTTTTCtaagaa |
Created |
N |
0.039 |
T |
hsa-miR-302a-5p |
0 |
tgtttTTTAAGAa |
Disrupted |
N |
0.123 |
|||
89928794 | rs184115252 | A | A |
hsa-miR-103a-3p hsa-miR-107 |
19 19 |
gagatgATGCTGC gagatgATGCTGC |
Disrupted Disrupted |
N N |
0.036 0.036 |
89928912 | rs150328292 | A | A |
hsa-miR-16-1-3p hsa-miR-379-3p hsa-miR-380-3p hsa-miR-411-3p hsa-miR-4495 |
11 5 5 5 5 |
ttacATACTGAtt TTACATActgatt TTACATActgatt TTACATActgatt TTACATActgatt |
Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N |
0.042 0.104 0.049 0.104 0.118 |
G |
hsa-miR-34a-3p hsa-miR-3617-3p hsa-miR-4310 hsa-miR-7157-5p |
16 15 11 11 |
ttacatGCTGATT ttacaTGCTGATt ttacATGCTGAtt ttacATGCTGAtt |
Created Created Created Created |
N N N N |
-0.045 -0.041 0.009 0.009 |
|||
89929300 | rs137922316 | C | C |
hsa-miR-4484 hsa-miR-6742-5p hsa-miR-6853-5p |
10 3 9 |
accccaCGCCTTT ACCCCACgccttt acCCCACGCcttt |
Disrupted Disrupted Disrupted |
N N N |
0.01 -0.025 -0.118 |
T |
hsa-miR-3622b-5p hsa-miR-3910 hsa-miR-548an hsa-miR-6890-5p |
10 10 10 3 |
accCCATGCCttt accccATGCCTTt accccaTGCCTTT ACCCCATgccttt |
Created Created Created Created |
N N N N |
-0.05 0.072 0.012 -0.056 |
|||
89929682 | rs45519933 | A | G |
hsa-miR-7108-3p |
0 |
agGGGCGGGgcct |
Created |
N |
-0.066 |
A |
hsa-miR-1291 hsa-miR-1913 hsa-miR-210-5p hsa-miR-3173-5p hsa-miR-324-3p hsa-miR-4749-3p hsa-miR-6752-3p hsa-miR-6775-3p hsa-miR-6799-3p |
0 |
aggggCAGGGCCt aGGGGCAGggcct AGGGGCAgggcct agggGCAGGGCct aGGGGCAGggcct AGGGGCAgggcct aggGGCAGGGcct aggggCAGGGCCt agggGCAGGGCct |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N N |
-0.033 -0.037 -0.076 -0.011 -0.046 -0.022 0.002 -0.061 -0.02 |
|||
89930003 | rs200010091 | - | T |
hsa-miR-3692-3p hsa-miR-548an |
7 10 |
tgccttTGTGGAA TGCCTTTgtggaa |
Unknown Unknown |
N N |
-0.023 0.036 |
- |
hsa-miR-4457 |
8 |
tgCCTTGTGgaa |
Unknown |
N |
0.029 |
|||
89931296 | rs45624935 | T | C |
hsa-miR-4520a-5p hsa-miR-4520b-5p hsa-miR-6854-3p |
0 |
tttaaACGCAGAt tttaaACGCAGAt tttAAACGCAgat |
Created Created Created |
N N N |
-0.128 -0.128 -0.075 |
T |
hsa-miR-20a-3p |
0 |
tttaAATGCAGAt |
Disrupted |
N |
-0.097 |
|||
89931593 | rs76554398 | T | T |
hsa-miR-570-3p hsa-miR-651-3p |
2 3 |
tttTGTTTTCctt ttttgtTTTCCTT |
Disrupted Disrupted |
N N |
-0.014 No Change |
89931595 | rs1060925 | G | G |
hsa-miR-570-3p |
2 |
gttttTGTTTTCc |
Disrupted |
N |
-0.014 |
T |
hsa-miR-3148 |
2 |
gtttttTTTTTCC |
Created |
N |
0.005 |