SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_001127231 |
---|---|
Gene Symbol: | AUTS2 |
Description: | Homo sapiens autism susceptibility candidate 2 (AUTS2), transcript variant 2, mRNA. |
Gene Location: | chr7(+):69063904-70257475 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr7:g.70791162A>G | COSN2233424 | RK014_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-let-7a-3p |
atgttTTGTATAttatatg |
17 |
CUAUACAA | m7b | Disrupted | -0.144000 | no TS |
-0.890000 |
hsa-let-7b-3p |
atgttTTGTATAttatatg |
17 |
CUAUACAA | m7b | Disrupted | -0.144000 | no TS |
-0.020000 |
hsa-let-7f-1-3p |
atgttTTGTATAttatatg |
17 |
CUAUACAA | m7b | Disrupted | -0.163000 | no TS |
-1.420000 |
hsa-miR-1277-5p |
atgttttgTATATTatatg |
13 |
AAAUAUAU | m6b | Disrupted | 0.154000 | 0.148000 |
1.460000 |
hsa-miR-369-3p |
atgttttgtGTATTATatg |
11 |
AAUAAUAC | m7b | (m6c->m7b) | 0.005000 | -0.168000 |
-2.380000 |
hsa-miR-374c-5p |
atgttttgTGTATTATatg |
0 | AUAAUACA | m8a | Created | no TS | -0.081000 |
-2.880000 |
hsa-miR-4666a-3p |
atgttTTGTATattatatg |
17 |
CAUACAAU | m6b | Disrupted | -0.057000 | no TS |
1.110000 |
hsa-miR-4731-3p |
atgttTTGTGTattatatg |
0 | CACACAAG | m6b | Created | -0.131000 | -0.233000 | No effect |
hsa-miR-5692b |
atgttttgtATATTATatg |
11 |
AAUAAUAU | m7b | (m7b->m6c) | -0.099000 | 0.009000 |
-0.270000 |
hsa-miR-5692c |
atgttttgtATATTATatg |
11 |
AAUAAUAU | m7b | (m7b->m6c) | -0.099000 | 0.009000 |
-0.330000 |
hsa-miR-655 |
atgttttgTGTATTATatg |
0 | AUAAUACA | m8a | Created | no TS | -0.127000 |
-1.430000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr7:g.70791202A>G | COSN15032743 | LP6005409-DNA_H01 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-5580-3p |
agcccagtCATATGTtctc |
5 |
CACAUAUG | m7b | Disrupted | -0.159000 | -0.073000 |
0.040000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr7:g.70791218C>G | COSN8517544 | 3498_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4771 |
ctcacGTCTGCTacttttt |
0 | AGCAGACU | m7a | Created | NA | NA |
-1.110000 |
hsa-miR-562 |
ctcacgtctGCTACTTTtt |
0 | AAAGUAGC | m8a | (m7b->m8a) | no TS | -0.194000 |
-0.210000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr7:g.70791378T>A | COSN1353060 | HCC82T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-602 |
aaggCCGTGTacatagtta |
0 | GACACGGG | m6b | Disrupted | -0.181000 | no TS |
6.940000 |
hsa-miR-602 |
aaggCCGTGTacatagtta |
0 | GACACGGG | m6b | Disrupted | -0.181 | no TS |
6.94 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr7:g.70791569T>C | COSN6890321 | RK308_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1277-5p |
gttcccATATATTgttata |
13 |
AAAUAUAU | m7b | Disrupted | 0.154000 | 0.024000 | No effect |
hsa-miR-3115 |
gttCCCATATattgttata |
0 | AUAUGGGU | m7a | (m7a->m6a) | NA | NA |
0.850000 |
hsa-miR-338-5p |
gttcccatATATTGTTata |
12 |
AACAAUAU | m8a | Disrupted | -0.037000 | no TS |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr7:g.70791819C>G | COSN8037228 | 8057484 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-361-3p |
ttgtgggctCTGGGGGAaa |
0 | UCCCCCAG | m8a | (m8a->m7b) | -0.511000 | -0.350000 | No effect |
hsa-miR-4690-3p |
ttgTGGGCTGtgggggaaa |
0 | GCAGCCCA | m7b | (m6b->m7b) | no TS | -0.104000 |
-0.020000 |
hsa-miR-5685 |
ttgTGGGCTGTgggggaaa |
0 | ACAGCCCA | m8a | Created | no TS | -0.067000 |
-0.050000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr7:g.70792149T>G | COSN8037229 | 8052570 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |