SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_000049
Gene Symbol: ASPA
Description: Homo sapiens aspartoacylase (ASPA), transcript variant 1, mRNA.
Gene Location: chr17(+):3379295-3402700
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr17:g.3499115C>T 9_124103 CRC-9-Tumor Colorectal adenocarcinoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr17:g.3499232C>A COSN5839496 HCC155 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3653 agcacatTTCTTAaattaa
 8
 CUAAGAAG m6b Disrupted -0.087000 -0.039000 No effect
hsa-miR-3658 agcacatTTCTTAAAttaa
 8
 UUUAAGAA m8a Disrupted -0.274000 -0.080000 1.900000
hsa-miR-5680 agcaCATTTCTtaaattaa
 2
 GAGAAAUG m7b Disrupted -0.164000 -0.025000 -0.270000
hsa-miR-3653 agcacatTTCTTAaattaa
 8
 CUAAGAAG m6b Disrupted -0.087000 -0.039000 No effect
hsa-miR-3658 agcacatTTCTTAAAttaa
 8
 UUUAAGAA m8a Disrupted -0.274000 -0.080000 1.900000
hsa-miR-5680 agcaCATTTCTtaaattaa
 2
 GAGAAAUG m7b Disrupted -0.164000 -0.025000 -0.270000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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