SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
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Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

RefSeq ID:	NM_005737
Gene Symbol:	ARL4C
Description:	Homo sapiens ADP-ribosylation factor-like 4C (ARL4C), mRNA.
Gene Location:	chr2(-):235401685-235405693
Browse Associations

Somatic mutations that impact miRNA target sites

Mutation			Mutation ID		Sample Name		Cancer Type
chr2:g.234495152A>T			9_26157		CRC-4-Tumor		Colorectal adenocarcinoma
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-4775	aaaaAAAATTAAaaaaaaa	0	UUAAUUUU	m8a	Created	no TS	0.065	-0.89
hsa-miR-590-3p	aaaaAAAATTAaaaaaaaa	0	UAAUUUUA	m7a	Created	no TS	0.11	No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Germline mutations in target sites of miRNAs in somatic mutation table

Location	SNP ID	Ancestral Allele	Allele	miR ID	Conservation	miRSite	FuncClass	Validation	context+ score change
234495152	rs6719230	A
			T	hsa-miR-4775 hsa-miR-590-3p	0	aAAAATTAAaaaa aAAAATTAaaaaa	Created Created	N N	0.065 0.11
234495154	rs201711991	-
			T	hsa-miR-4775 hsa-miR-590-3p	0	aaAAAATTAAaaa aaAAAATTAaaaa	Unknown Unknown	N N	0.064 0.109

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