SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_000045
Gene Symbol: ARG1
Description: Homo sapiens arginase, liver (ARG1), transcript variant 2, mRNA.
Gene Location: chr6(+):131894364-131905468
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr6:g.131583953A>G COSN6303904 RK187_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3160-5p ggcataattAGAAAGCtaa
1
GGCUUUCU m7b (m7b->m6c) -0.252000 no TS 1.720000
hsa-miR-4263 ggcataaTTAGAAagctaa
0 AUUCUAAG m6b Disrupted -0.192000 -0.157000 1.200000
hsa-miR-4275 ggcaTAATTGGaaagctaa
0 CCAAUUAC m7a Created NA NA -0.740000
hsa-miR-4735-5p ggcatAATTAGaaagctaa
0 CCUAAUUU m6b Disrupted -0.025000 no TS 5.760000
hsa-miR-576-5p ggcataATTAGAAagctaa
0 AUUCUAAU m7b Disrupted -0.225000 -0.012000 1.330000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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