SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001195251
Gene Symbol: APTX
Description: Homo sapiens aprataxin (APTX), transcript variant 6, mRNA.
Gene Location: chr9(-):32972603-33001639
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.32973392T>A COSN15418904 AOCS-139-19-0 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4307 attAAAACATgcagctttt
 11
 AAUGUUUU m7b (m7b->m6c) -0.049000 no TS 0.090000
hsa-miR-4666b attaaaACATGCAgctttt
 9
 UUGCAUGU m7b Disrupted -0.239000 no TS 11.390000
hsa-miR-4307 attAAAACATgcagctttt
 11
 AAUGUUUU m7b (m7b->m6c) -0.049000 no TS 0.090000
hsa-miR-4666b attaaaACATGCAgctttt
 9
 UUGCAUGU m7b Disrupted -0.239000 no TS 11.390000
hsa-miR-4307 attAAAACATgcagctttt
 11
 AAUGUUUU m7b (m7b->m6c) -0.049000 no TS 0.090000
hsa-miR-4666b attaaaACATGCAgctttt
 9
 UUGCAUGU m7b Disrupted -0.239000 no TS 11.390000
hsa-miR-4307 attAAAACATgcagctttt
 11
 AAUGUUUU m7b (m7b->m6c) -0.049000 no TS 0.090000
hsa-miR-4666b attaaaACATGCAgctttt
 9
 UUGCAUGU m7b Disrupted -0.239000 no TS 11.390000


Mutation Mutation ID Sample Name Cancer Type
chr9:g.32973574G>A ICGC_1364741 TCGA-BS-A0UV-01A-11D-A10B-09 UterineCorpusEndometrioidCarcinoma(TCGA,US)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr9:g.32973610G>A ICGC_1364742 TCGA-BS-A0UV-01A-11D-A10B-09 UterineCorpusEndometrioidCarcinoma(TCGA,US)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3917 taactGTCCGAGatgggat
 0 GCUCGGAC m7b Disrupted -0.531 no TS 7.23
hsa-miR-4520a-3p taaCTGTCCAAgatgggat
 0 UUGGACAG m8a Created no TS -0.395 -0.48
hsa-miR-4520b-3p taacTGTCCAAgatgggat
 0 UUUGGACA m7b Created no TS -0.153 -0.34

Mutation Mutation ID Sample Name Cancer Type
chr9:g.32973663C>T COSN4894256 PCSI_0058_Pa_X [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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