SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_000041
Gene Symbol: APOE
Description: Homo sapiens apolipoprotein E (APOE), mRNA.
Gene Location: chr19(+):45409038-45412650
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr19:g.44909290T>A COSN5761017 HCC93 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-2467-5p gccaccccGAGCCTCctgc
0 UGAGGCUC m7b Created no TS -0.095000 -14.640000
hsa-miR-3612 gccaccccgTGCCTCCTgc
0 AGGAGGCA m8a (m8a->m7b) -0.171000 -0.090000 2.140000
hsa-miR-3622a-5p gccacccCGTGCCTcctgc
1
CAGGCACG m7b Disrupted -0.105000 no TS 3.590000
hsa-miR-564 gccaccCCGTGCCTcctgc
0 AGGCACGG m8a Disrupted -0.195000 no TS 7.550000
hsa-miR-650 gccaccccgTGCCTCCTgc
0 AGGAGGCA m8a (m8a->m7b) -0.143000 -0.099000 -1.990000
hsa-miR-2467-5p gccaccccGAGCCTCctgc
0 UGAGGCUC m7b Created no TS -0.095000 -14.640000
hsa-miR-3612 gccaccccgTGCCTCCTgc
0 AGGAGGCA m8a (m8a->m7b) -0.171000 -0.090000 2.140000
hsa-miR-3622a-5p gccacccCGTGCCTcctgc
1
CAGGCACG m7b Disrupted -0.105000 no TS 3.590000
hsa-miR-564 gccaccCCGTGCCTcctgc
0 AGGCACGG m8a Disrupted -0.195000 no TS 7.550000
hsa-miR-650 gccaccccgTGCCTCCTgc
0 AGGAGGCA m8a (m8a->m7b) -0.143000 -0.099000 -1.990000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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