SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000041 |
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Gene Symbol: | APOE |
Description: | Homo sapiens apolipoprotein E (APOE), mRNA. |
Gene Location: | chr19(+):45409038-45412650 |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
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chr19:g.44909290T>A | COSN5761017 | HCC93 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-2467-5p |
gccaccccGAGCCTCctgc |
0 | UGAGGCUC | m7b | Created | no TS | -0.095000 |
-14.640000 |
hsa-miR-3612 |
gccaccccgTGCCTCCTgc |
0 | AGGAGGCA | m8a | (m8a->m7b) | -0.171000 | -0.090000 |
2.140000 |
hsa-miR-3622a-5p |
gccacccCGTGCCTcctgc |
1 |
CAGGCACG | m7b | Disrupted | -0.105000 | no TS |
3.590000 |
hsa-miR-564 |
gccaccCCGTGCCTcctgc |
0 | AGGCACGG | m8a | Disrupted | -0.195000 | no TS |
7.550000 |
hsa-miR-650 |
gccaccccgTGCCTCCTgc |
0 | AGGAGGCA | m8a | (m8a->m7b) | -0.143000 | -0.099000 |
-1.990000 |
hsa-miR-2467-5p |
gccaccccGAGCCTCctgc |
0 | UGAGGCUC | m7b | Created | no TS | -0.095000 |
-14.640000 |
hsa-miR-3612 |
gccaccccgTGCCTCCTgc |
0 | AGGAGGCA | m8a | (m8a->m7b) | -0.171000 | -0.090000 |
2.140000 |
hsa-miR-3622a-5p |
gccacccCGTGCCTcctgc |
1 |
CAGGCACG | m7b | Disrupted | -0.105000 | no TS |
3.590000 |
hsa-miR-564 |
gccaccCCGTGCCTcctgc |
0 | AGGCACGG | m8a | Disrupted | -0.195000 | no TS |
7.550000 |
hsa-miR-650 |
gccaccccgTGCCTCCTgc |
0 | AGGAGGCA | m8a | (m8a->m7b) | -0.143000 | -0.099000 |
-1.990000 |