SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_000037
Gene Symbol: ANK1
Description: Homo sapiens ankyrin 1, erythrocytic (ANK1), transcript variant 3, mRNA.
Gene Location: chr8(-):41510743-41655140

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr8:g.41655214T>G 0_14 Lung cancer
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1226-3p cattccaCTGGTGAcaccc
6
UCACCAGC m7a Created -0.038 -0.078 -0.06
hsa-miR-125b-2-3p cattccACTTGTGAcaccc
6
UCACAAGU m8a Disrupted -0.048 no TS 4.57
hsa-miR-4457 cattccaCTTGTGAcaccc
6
UCACAAGG m7a Disrupted -0.213 -0.224 0.34
hsa-miR-4733-3p cattccaCTGGTGacaccc
7
CCACCAGG m6b Created -0.179 -0.21 -1.83
hsa-miR-513b cattccaCTTGTGAcaccc
6
UUCACAAG m7b Disrupted -0.014 no TS 2.09

Mutation Mutation ID Sample Name Cancer Type
chr8:g.41655390T>A ICGC_sm168370 RK035_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1323 tttttaaatAGTTTTGAct
0 UCAAAACU m8a (m7a->m8a) -0.216 -0.33 No effect
hsa-miR-548a-3p tttttaaatAGTTTTGact
0 CAAAACUG m7a (m6a->m7a) NA NA -0.24
hsa-miR-548o-3p tttttaaatAGTTTTGact
0 CCAAAACU m7b (m6b->m7b) -0.237 -0.393 0.06

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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