SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000037 |
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Gene Symbol: | ANK1 |
Description: | Homo sapiens ankyrin 1, erythrocytic (ANK1), transcript variant 3, mRNA. |
Gene Location: | chr8(-):41510743-41655140 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.41655214T>G | 0_14 | Lung cancer | ||||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1226-3p |
cattccaCTGGTGAcaccc |
6 |
UCACCAGC | m7a | Created | -0.038 | -0.078 |
-0.06 |
hsa-miR-125b-2-3p |
cattccACTTGTGAcaccc |
6 |
UCACAAGU | m8a | Disrupted | -0.048 | no TS |
4.57 |
hsa-miR-4457 |
cattccaCTTGTGAcaccc |
6 |
UCACAAGG | m7a | Disrupted | -0.213 | -0.224 |
0.34 |
hsa-miR-4733-3p |
cattccaCTGGTGacaccc |
7 |
CCACCAGG | m6b | Created | -0.179 | -0.21 |
-1.83 |
hsa-miR-513b |
cattccaCTTGTGAcaccc |
6 |
UUCACAAG | m7b | Disrupted | -0.014 | no TS |
2.09 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.41655390T>A | ICGC_sm168370 | RK035_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1323 |
tttttaaatAGTTTTGAct |
0 | UCAAAACU | m8a | (m7a->m8a) | -0.216 | -0.33 | No effect |
hsa-miR-548a-3p |
tttttaaatAGTTTTGact |
0 | CAAAACUG | m7a | (m6a->m7a) | NA | NA |
-0.24 |
hsa-miR-548o-3p |
tttttaaatAGTTTTGact |
0 | CCAAAACU | m7b | (m6b->m7b) | -0.237 | -0.393 |
0.06 |