SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_000028
Gene Symbol: AGL
Description: Homo sapiens amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase (AGL), transcript variant 4, mRNA.
Gene Location: chr1(+):100316044-100389579
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr1:g.99921661G>T cosmic_v64_1651109 Colorectal
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1277-5p tttattacATATATTaagt
0 AAAUAUAU m7b Created 0.141 0.235 No effect
hsa-miR-2054 ttTATTACAGatattaagt
0 CUGUAAUA m8a (m8a->m7a) 0 0 -0.07
hsa-miR-3607-3p tttaTTACAGatattaagt
2
ACUGUAAA m6b Disrupted 0.052 0.026 No effect
hsa-miR-3686 tttaTTACAGATattaagt
2
AUCUGUAA m8a Disrupted -0.349 -0.226 No effect
hsa-miR-380-3p tttATTACATAtattaagt
0 UAUGUAAU m8a Created 0.084 0.168 No effect
hsa-miR-3924 tttatTACATATattaagt
0 AUAUGUAU m7a Created -0.106 -0.106 No effect
hsa-miR-4495 tttaTTACATatattaagt
0 AAUGUAAA m6b Created 0.099 0.195 No effect
hsa-miR-889 tttattacaGATATTAAgt
0 UUAAUAUC m8a (m8a->m7b) 0 0 No effect
hsa-miR-1277-5p tttattacATATATTaagt
0 AAAUAUAU m7b Created 0.141000 0.235000 No effect
hsa-miR-2054 ttTATTACAGatattaagt
0 CUGUAAUA m8a (m8a->m7a) 0.000000 0.000000 -0.070000
hsa-miR-3607-3p tttaTTACAGatattaagt
2
ACUGUAAA m6b Disrupted 0.052000 0.026000 No effect
hsa-miR-3686 tttaTTACAGATattaagt
2
AUCUGUAA m8a Disrupted -0.349000 -0.226000 No effect
hsa-miR-380-3p tttATTACATAtattaagt
0 UAUGUAAU m8a Created 0.084000 0.168000 No effect
hsa-miR-3924 tttatTACATATattaagt
5
AUAUGUAU m7a Created -0.106000 -0.106000 No effect
hsa-miR-4495 tttaTTACATatattaagt
0 AAUGUAAA m6b Created 0.099000 0.195000 No effect
hsa-miR-889 tttattacaGATATTAAgt
2
UUAAUAUC m8a (m8a->m7b) 0.000000 0.000000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr1:g.99921714A>G COSN8882346 AOCS-093-3-6 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-124-3p catatgtaaGTGCCTTAta
3
UAAGGCAC m8a (m7b->m8a) -0.233000 -0.528000 -1.750000
hsa-miR-3910 catatgtaaATGCCTTata
3
AAAGGCAU m7b (m7b->m6c) -0.740000 -0.509000 0.090000
hsa-miR-506-3p catatgtaaGTGCCTTAta
3
UAAGGCAC m8a (m7b->m8a) -0.234000 -0.535000 -0.060000


Mutation Mutation ID Sample Name Cancer Type
chr1:g.99921923G>T COSN6499463 CHC205T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr1:g.99922679C>T COSN6499464 CHC205T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4495 taacaTTTACATgagttaa
0 AAUGUAAA m7b Disrupted 0.099000 0.096000 0.450000

Mutation Mutation ID Sample Name Cancer Type
chr1:g.99922947A>C COSN6499465 CHC205T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-2054 aagaaATTACAGaagaaaa
0 CUGUAAUA m7a Created 0.000000 0.000000 -0.140000
hsa-miR-302b-5p aagaaaTTAAAGaagaaaa
0 ACUUUAAC m6b Disrupted 0.124000 0.042000 0.020000
hsa-miR-302d-5p aagaaaTTAAAGaagaaaa
0 ACUUUAAC m6b Disrupted 0.131000 0.042000 0.070000
hsa-miR-3182 aagaaattACAGAAGaaaa
0 GCUUCUGU m7b Created no TS -0.148000 -6.360000
hsa-miR-3607-3p aagaaaTTACAGaagaaaa
2
ACUGUAAA m6b Created 0.052000 0.056000 -6.640000
hsa-miR-3686 aagaaaTTACAGAagaaaa
2
AUCUGUAA m7b Created -0.349000 -0.411000 -0.030000
hsa-miR-4775 aagAAATTAAagaagaaaa
2
UUAAUUUU m7a (m7a->m6a) 0.270000 0.119000 0.030000
hsa-miR-4778-3p aagaaattaAAGAAGAaaa
1
UCUUCUUC m7a (m7a->m6b) 0.026000 no TS 0.010000


Mutation Mutation ID Sample Name Cancer Type
chr1:g.99923192T>C COSN6499466 CHC205T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr1:g.99923795C>T COSN1395087 RK209_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4775 aatcAAAATTAAaattact
2
UUAAUUUU m8a Created 0.270000 0.207000 No effect
hsa-miR-590-3p aatcaaaatTAAAATTAct
2
UAAUUUUA m8a (m7b->m8a) 0.319000 0.277000 -0.020000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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