SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000020 |
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Gene Symbol: | ACVRL1 |
Description: | Homo sapiens activin A receptor type II-like 1 (ACVRL1), transcript variant 1, mRNA. |
Gene Location: | chr12(+):52301201-52317145 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr12:g.51921192G>C | COSN15433137 | AOCS-150-8-X | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3136-5p |
gaggctccaCAGTCAGagt |
0 | CUGACUGA | m7a | (m6b->m7a) | NA | NA | No effect |
hsa-miR-345-5p |
gaggctccaGAGTCAGagt |
0 | GCUGACUC | m7b | (m7b->m6c) | -0.265000 | -0.065000 | No effect |
hsa-miR-4318 |
gaggctCCACAGTcagagt |
0 | CACUGUGG | m7b | Created | no TS | -0.128000 |
-0.790000 |
hsa-miR-4522 |
gaggctcCAGAGTCAgagt |
0 | UGACUCUG | m8a | Disrupted | -0.211000 | no TS |
0.500000 |
hsa-miR-514a-5p |
gaggctCCAGAGTcagagt |
1 |
UACUCUGG | m7b | Disrupted | -0.305000 | -0.182000 |
0.590000 |
hsa-miR-516b-5p |
gaggCTCCAGAgtcagagt |
2 |
AUCUGGAG | m7b | Disrupted | -0.158000 | -0.071000 |
0.010000 |
hsa-miR-518c-5p |
gaggcTCCAGAGtcagagt |
2 |
UCUCUGGA | m7b | Disrupted | -0.242000 | -0.159000 | No effect |
hsa-miR-943 |
gaggctccACAGTCAGagt |
0 | CUGACUGU | m8a | Created | no TS | -0.083000 | No effect |
hsa-miR-3136-5p |
gaggctccaCAGTCAGagt |
0 | CUGACUGA | m7a | (m6b->m7a) | NA | NA | No effect |
hsa-miR-345-5p |
gaggctccaGAGTCAGagt |
0 | GCUGACUC | m7b | (m7b->m6c) | -0.265000 | -0.065000 | No effect |
hsa-miR-4318 |
gaggctCCACAGTcagagt |
0 | CACUGUGG | m7b | Created | no TS | -0.128000 |
-0.790000 |
hsa-miR-4522 |
gaggctcCAGAGTCAgagt |
0 | UGACUCUG | m8a | Disrupted | -0.211000 | no TS |
0.500000 |
hsa-miR-514a-5p |
gaggctCCAGAGTcagagt |
1 |
UACUCUGG | m7b | Disrupted | -0.305000 | -0.182000 |
0.590000 |
hsa-miR-516b-5p |
gaggCTCCAGAgtcagagt |
2 |
AUCUGGAG | m7b | Disrupted | -0.158000 | -0.071000 |
0.010000 |
hsa-miR-518c-5p |
gaggcTCCAGAGtcagagt |
2 |
UCUCUGGA | m7b | Disrupted | -0.242000 | -0.159000 | No effect |
hsa-miR-943 |
gaggctccACAGTCAGagt |
0 | CUGACUGU | m8a | Created | no TS | -0.083000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr12:g.51921248C>A | COSN9563139 | AOCS-139-12-5 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-106a-5p |
gggcctGCACTTTgccccc |
7 |
AAAAGUGC | m7b | Disrupted | 0.017000 | -0.017000 | No effect |
hsa-miR-106b-5p |
gggcctGCACTTTgccccc |
7 |
UAAAGUGC | m7b | Disrupted | 0.017000 | -0.017000 | No effect |
hsa-miR-17-5p |
gggcctGCACTTTGccccc |
7 |
CAAAGUGC | m8a | Disrupted | 0.017000 | -0.017000 | No effect |
hsa-miR-20a-5p |
gggcctGCACTTTgccccc |
7 |
UAAAGUGC | m7b | Disrupted | 0.017000 | -0.017000 | No effect |
hsa-miR-20b-5p |
gggcctGCACTTTGccccc |
7 |
CAAAGUGC | m8a | Disrupted | 0.017000 | -0.017000 | No effect |
hsa-miR-519a-3p |
gggccTGCACTTTgccccc |
6 |
AAAGUGCA | m8a | Disrupted | 0.028000 | no TS |
0.830000 |
hsa-miR-519b-3p |
gggccTGCACTTTgccccc |
6 |
AAAGUGCA | m8a | Disrupted | 0.028000 | no TS |
0.110000 |
hsa-miR-519c-3p |
gggccTGCACTTTgccccc |
6 |
AAAGUGCA | m8a | Disrupted | 0.028000 | no TS | No effect |
hsa-miR-519d |
gggcctGCACTTTGccccc |
7 |
CAAAGUGC | m8a | Disrupted | 0.017000 | -0.008000 | No effect |
hsa-miR-520g |
gggcctgCACTTTGccccc |
1 |
ACAAAGUG | m7b | Disrupted | 0.066000 | no TS | No effect |
hsa-miR-520h |
gggcctgCACTTTGccccc |
1 |
ACAAAGUG | m7b | Disrupted | 0.066000 | no TS |
0.010000 |
hsa-miR-526b-3p |
gggcctGCACTTTgccccc |
7 |
GAAAGUGC | m7b | Disrupted | 0.035000 | -0.008000 | No effect |
hsa-miR-93-5p |
gggcctGCACTTTGccccc |
7 |
CAAAGUGC | m8a | Disrupted | 0.008000 | -0.017000 |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr12:g.51921320C>T | COSN5323901 | RK298_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-185-3p |
ctgtcCAGCCCCTggcaca |
1 |
AGGGGCUG | m8a | Disrupted | -0.546000 | -0.421000 | No effect |
hsa-miR-28-5p |
ctgtccAGCTCCTggcaca |
0 | AAGGAGCU | m7b | Created | no TS | -0.056000 | No effect |
hsa-miR-3139 |
ctgtccAGCTCCTggcaca |
0 | UAGGAGCU | m7b | Created | no TS | -0.065000 |
-0.020000 |
hsa-miR-3652 |
ctgTCCAGCCcctggcaca |
7 |
CGGCUGGA | m7b | (m7b->m6b) | -0.206000 | -0.174000 | No effect |
hsa-miR-4430 |
ctgTCCAGCCcctggcaca |
7 |
AGGCUGGA | m7b | (m7b->m6b) | -0.215000 | -0.165000 | No effect |
hsa-miR-4487 |
ctgtCCAGCTCctggcaca |
0 | AGAGCUGG | m7b | Created | -0.159000 | -0.313000 | No effect |
hsa-miR-4492 |
ctgtCCAGCCCCtggcaca |
2 |
GGGGCUGG | m8a | Disrupted | -0.891000 | -0.743000 |
0.010000 |
hsa-miR-4498 |
ctgtCCAGCCCctggcaca |
2 |
UGGGCUGG | m7b | Disrupted | -1.027000 | -0.851000 |
-0.240000 |
hsa-miR-5001-5p |
ctgtCCAGCCCctggcaca |
2 |
AGGGCUGG | m7b | Disrupted | -0.938000 | -0.790000 | No effect |
hsa-miR-665 |
ctgtccagCTCCTGGcaca |
0 | ACCAGGAG | m7b | Created | no TS | -0.094000 |
-0.390000 |
hsa-miR-708-5p |
ctgtccAGCTCCTggcaca |
0 | AAGGAGCU | m7b | Created | no TS | -0.037000 |
-0.400000 |
hsa-miR-762 |
ctgtCCAGCCCCtggcaca |
2 |
GGGGCUGG | m8a | Disrupted | -1.028000 | -0.852000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr12:g.51921773T>C | ICGC_DEACD824-2A78-11E2-B303-24FD496BB9B8 | CPCG_0103_Pr_P_P6 | ProstateCancer(OICR,CA) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1254 |
ctcttgttgTCCAGGCTag |
0 | AGCCUGGA | m8a | (m8a->m7b) | -0.143 | no TS |
1.13 |
hsa-miR-1285-3p |
ctcttgtTGCCCAGgctag |
0 | UCUGGGCA | m7b | Created | -0.052 | -0.16 |
-1.19 |
hsa-miR-196a-3p |
ctctTGTTGCCcaggctag |
0 | CGGCAACA | m7b | Created | no TS | -0.097 |
-1.33 |
hsa-miR-3116 |
ctcttgttgTCCAGGCtag |
0 | UGCCUGGA | m7b | (m7b->m6c) | -0.115 | no TS |
1.49 |
hsa-miR-3187-5p |
ctcttgtTGCCCAGGctag |
0 | CCUGGGCA | m8a | Created | -0.052 | -0.141 | No effect |
hsa-miR-3529-3p |
ctcTTGTTGTccaggctag |
1 |
AACAACAA | m7b | (m7b->m6b) | 0.076 | no TS |
-1.3 |
hsa-miR-3690 |
ctcttgttGTCCAGGctag |
0 | ACCUGGAC | m7b | Disrupted | -0.139 | no TS |
2.26 |
hsa-miR-4638-3p |
ctcttgtTGTCCAGGctag |
1 |
CCUGGACA | m8a | Disrupted | -0.097 | -0.002 |
0.01 |
hsa-miR-5189 |
ctcttgtTGCCCAGgctag |
0 | UCUGGGCA | m7b | Created | -0.052 | -0.15 |
-0.02 |
hsa-miR-612 |
ctcttgtTGCCCAGgctag |
0 | GCUGGGCA | m7b | Created | -0.049 | -0.138 | No effect |
hsa-miR-661 |
ctcttgttgCCCAGGCtag |
0 | UGCCUGGG | m7b | (m6c->m7b) | -0.108 | -0.235 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr12:g.51922003G>A | ICGC_8630A43C-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4733-5p |
agtgcTGGGATTacaggtg |
0 | AAUCCCAA | m7a | Created | NA | NA |
-7.26 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr12:g.51922853T>G | COSN5945991 | RK193_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-106a-5p |
ggtgGCACTTTTctaggcc |
7 |
AAAAGUGC | m8a | Disrupted | 0.017000 | 0.034000 |
-0.360000 |
hsa-miR-106b-5p |
ggtgGCACTTTtctaggcc |
7 |
UAAAGUGC | m7b | Disrupted | 0.017000 | 0.034000 |
-3.550000 |
hsa-miR-17-5p |
ggtgGCACTTTtctaggcc |
7 |
CAAAGUGC | m7b | Disrupted | 0.017000 | 0.034000 |
-0.360000 |
hsa-miR-20a-5p |
ggtgGCACTTTtctaggcc |
7 |
UAAAGUGC | m7b | Disrupted | 0.017000 | 0.034000 |
-0.690000 |
hsa-miR-20b-5p |
ggtgGCACTTTtctaggcc |
7 |
CAAAGUGC | m7b | Disrupted | 0.017000 | 0.034000 |
-0.410000 |
hsa-miR-4773 |
ggtggcaCTGTTCTaggcc |
0 | CAGAACAG | m7b | Created | no TS | -0.091000 | No effect |
hsa-miR-519d |
ggtgGCACTTTtctaggcc |
7 |
CAAAGUGC | m7b | Disrupted | 0.017000 | 0.025000 | No effect |
hsa-miR-526b-3p |
ggtgGCACTTTtctaggcc |
7 |
GAAAGUGC | m7b | Disrupted | 0.035000 | 0.043000 | No effect |
hsa-miR-548t-5p |
ggtggCACTTTTctaggcc |
2 |
CAAAAGUG | m7b | Disrupted | 0.075000 | no TS |
0.020000 |
hsa-miR-93-5p |
ggtgGCACTTTtctaggcc |
7 |
CAAAGUGC | m7b | Disrupted | 0.008000 | 0.025000 |
-0.270000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr12:g.51923209G>A | COSN1576055 | RK167_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-222-5p |
ggtggcgtTACTGAGagca |
2 |
CUCAGUAG | m7a | Created | -0.026000 | -0.026000 |
-1.100000 |
hsa-miR-4264 |
ggtggcgttACTGAGagca |
4 |
ACUCAGUC | m6b | Created | -0.039000 | -0.110000 |
0.140000 |
hsa-miR-4797-3p |
ggtggcgtTACTGAGAgca |
4 |
UCUCAGUA | m8a | Created | -0.051000 | -0.306000 |
-0.020000 |
hsa-miR-802 |
ggtggcGTTACTGagagca |
0 | CAGUAACA | m7a | Created | NA | NA |
-14.100000 |