SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_006720 |
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Gene Symbol: | ABLIM1 |
Description: | Homo sapiens actin binding LIM protein 1 (ABLIM1), transcript variant 2, mRNA. |
Gene Location: | chr10(-):116190868-116286685 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.114431367A>G | COSN1472115 | RK046_C02 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-543 |
tgaaagcaAATGTTTagaa |
4 |
AAACAUUC | m7a | Disrupted | 0.047000 | 0.047000 | No effect |
hsa-miR-543 |
tgaaagcaAATGTTTagaa |
0 | AAACAUUC | m7a | Disrupted | 0.047 | 0.047 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.114431540T>C | COSN10060255 | C0021T | [kidney][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4323 |
ctttTGGGGCTttatgtac |
4 |
CAGCCCCA | m7b | Created | -0.090000 | -0.408000 |
-0.170000 |
hsa-miR-548aa |
cttttggGGTTTTatgtac |
0 | AAAAACCA | m6b | Disrupted | -0.001000 | 0.001000 |
0.730000 |
hsa-miR-548ap-3p |
cttttggGGTTTTatgtac |
0 | AAAAACCA | m6b | Disrupted | -0.001000 | 0.001000 |
0.650000 |
hsa-miR-548as-3p |
cttttgGGGTTTTAtgtac |
0 | UAAAACCC | m8a | Disrupted | -0.170000 | no TS |
1.850000 |
hsa-miR-548at-3p |
cttttggGGTTTTatgtac |
0 | CAAAACCG | m6b | Disrupted | -0.045000 | no TS |
1.180000 |
hsa-miR-548t-3p |
cttttggGGTTTTatgtac |
0 | AAAAACCA | m6b | Disrupted | -0.001000 | 0.001000 |
0.730000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.114432012A>T | COSN8149633 | ASHPC_0011_Pa_P | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-130b-5p |
agaaGAAAGAGaaaccttc |
7 |
ACUCUUUC | m7b | Disrupted | -0.022000 | 0.073000 |
0.060000 |
hsa-miR-4753-3p |
agaagAAAGAGAAaccttc |
7 |
UUCUCUUU | m8a | Disrupted | -0.148000 | -0.170000 |
0.010000 |
hsa-miR-4768-5p |
agaagaaAGAGAAaccttc |
9 |
AUUCUCUC | m6b | Disrupted | -0.055000 | -0.089000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.114433318T>A | 11_66 | 2542 | Breast cancer | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3129-3p |
ctgcacatTTAGTTaaact |
4 |
AAACUAAU | m6b | Disrupted | 0.233 | 0.111 | No effect |
hsa-miR-5583-5p |
ctgcacatTTAGTTaaact |
4 |
AAACUAAU | m6b | Disrupted | 0.223 | 0.104 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.114433995A>T | COSN6057432 | RK220_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.114434171G>C | COSN8530229 | AOCS-105-1-9 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3120-3p |
tagcctTTGCTGTctcagt |
0 | CACAGCAA | m7b | Created | no TS | 0.069000 |
-0.020000 |
hsa-miR-4524a-3p |
tagcctttgCTGTCTCAgt |
3 |
UGAGACAG | m8a | (m7a->m8a) | 0.025000 | 0.016000 |
0.860000 |
hsa-miR-4524b-3p |
tagcctttgCTGTCTCagt |
0 | GAGACAGG | m7a | (m6a->m7a) | NA | NA | No effect |
hsa-miR-545-3p |
tagccTTTGCTGtctcagt |
5 |
UCAGCAAA | m7b | Created | -0.038000 | 0.087000 |
-0.070000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.114434534A>G | COSN1112769 | HX13T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-2054 |
taggATTACAagctgtctc |
2 |
CUGUAAUA | m6b | Disrupted | 0.123000 | no TS |
3.460000 |
hsa-miR-2054 |
taggATTACAagctgtctc |
0 | CUGUAAUA | m6b | Disrupted | 0.123 | no TS |
3.46 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.114435208A>T | COSN8919043 | SS6003149 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1264 |
aggaAAGACTTGtttttct |
0 | CAAGUCUU | m8a | Created | no TS | -0.044000 |
-0.020000 |
hsa-miR-511 |
aggAAAGACAtgtttttct |
0 | GUGUCUUU | m7b | (m7b->m6c) | 0.033000 | 0.005000 | No effect |