PolymiRTS 3.0 files

1. target_miRSNP_human_CLASH.txt
A list of human genes containing SNPs/indels in the miRNA target sites, mapped from CLASH experiment data.

2. target_miRSNP_human.txt
A list of human genes containing SNPs in predicted and experimentally supported miRNA target sites.
The column labels are described in the Help section of the website.

3. target_miRSNP_mouse.txt
A list of mouse genes containing SNPs in predicted and experimentally supported miRNA target sites.
The column labels are described in the Help section of the website.

4. SNPs_and_indels_in_miRNA_seeds_human.txt
A list of human miRNAs containing SNPs/indels in seed regions.

5. SNPs_and_indels_in_miRNA_seeds_mouse.txt
A list of mouse miRNAs containing SNPs/indels in seed regions.

6. experimentally_supported_miRSNP_human.txt
A list of human genes containing SNPs in experimentally supported miRNA target sites.
The column labels are described in the Help section of the website.

7. experimentally_supported_miRSNP_mouse.txt
A list of mouse genes containing SNPs in experimentally supported miRNA target sites.
The column labels are described in the Help section of the website.

8. genes_associated_with_human_diseaases_traits.txt
Human genes containing SNPs in predicted miRNA target sites that have been associated with human diseases and traits.


Files in the cis-eQTL folder:
These files list genes regulated by cis-eQTLs in human and mouse.
The format of these file names is: cis_A_B_C.txt, where
A is either h for human datasets or m for mouse datasets;
B is the tissue or cell type; and
C is the PUBMED ID for human or GeneNetwork Accession ID for mouse of the associated dataset.