SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NR_027473
Gene Symbol: KDM2A

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr11:g.67254303C>G COSM2041419 KYSE-150 [oesophagus][upper_third][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4779 acatgcCCCTCCTgt UAGGAGGG m7b Disrupted HPRO7_510_G817.1_67021769
hsa-miR-6743-5p acaTGCCCCTcctgt AAGGGGCA m7b Disrupted HPRO7_510_G817.1_67021769
hsa-miR-6862-5p aCATGCCCctcctgt CGGGCAUG m7b Disrupted HPRO7_510_G817.1_67021769
hsa-miR-3184-5p acatGCCCCTCctgt UGAGGGGC m7b Disrupted HPRO7_510_G817.1_67021769
hsa-miR-423-5p acatGCCCCTCctgt UGAGGGGC m7b Disrupted HPRO7_510_G817.1_67021769
hsa-miR-4253 aCATGCCCctcctgt AGGGCAUG m7b Disrupted HPRO7_510_G817.1_67021769
hsa-miR-4304 aCATGCCGctcctgt CCGGCAUG m7b Created HPRO7_510_G817.1_67021769
hsa-miR-4459 acatgccCCTCCTGt CCAGGAGG m7b Disrupted HPRO7_510_G817.1_67021769
hsa-miR-4688 acaTGCCCCTcctgt UAGGGGCA m7b Disrupted HPRO7_510_G817.1_67021769

Mutation Mutation ID Sample Name Cancer Type
chr11:g.67254292C>T COSM4694876 T3080 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3688-5p cataatTTGCCACat AGUGGCAA m7b Created HPRO7_510_G817.1_67021769
hsa-miR-891a-3p cataattTGCCACat AGUGGCAC m6b Created HPRO7_510_G817.1_67021769

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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