SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_024971
Gene Symbol: TRPM3

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.70810049C>T COSN15102894 SM-4B296 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-9500 ggaCTTCCCTTtgtc AAGGGAAG m8a Disrupted HPTA4_4100_G18407.1_73424948
hsa-miR-4311 ggactTCTCTTTgtc GAAAGAGA m7b Created HPTA4_4100_G18407.1_73424948

Mutation Mutation ID Sample Name Cancer Type
chr9:g.70810030G>C COSN524751 TCGA-E2-A10C-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7162-3p tatgCCTCAGAatat UCUGAGGU m7a Created HPTA4_4100_G18407.1_73424948
hsa-miR-4649-3p tatGCCTCAGAatat UCUGAGGC m8a Created HPTA4_4100_G18407.1_73424948
hsa-miR-4518 tatgCCTGAGaatat GCUCAGGG m6b Disrupted HPTA4_4100_G18407.1_73424948
hsa-miR-4514 taTGCCTGagaatat ACAGGCAG m6b Disrupted HPTA4_4100_G18407.1_73424948
hsa-miR-4269 taTGCCTGagaatat GCAGGCAC m6b Disrupted HPTA4_4100_G18407.1_73424948
hsa-miR-3664-3p tatgCCTGAGAatat UCUCAGGA m7a Disrupted HPTA4_4100_G18407.1_73424948
hsa-miR-1266-5p tatgCCTGAGaatat CCUCAGGG m6b Disrupted HPTA4_4100_G18407.1_73424948
hsa-miR-4778-5p tatgcctCAGAATat AAUUCUGU m6b Created HPTA4_4100_G18407.1_73424948

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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