SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_018128
Gene Symbol: TSR1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.2330529C>T COSM3421345 TCGA-F5-6814-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-196a-5p tttACTACCTcatga UAGGUAGU m7b Disrupted HPTA4_1654_G7389.1_2233817
hsa-miR-196b-5p tttACTACCTcatga UAGGUAGU m7b Disrupted HPTA4_1654_G7389.1_2233817
hsa-miR-202-3p tttacTACCTCatga AGAGGUAU m6b Disrupted HPTA4_1654_G7389.1_2233817
hsa-miR-4458 tttaCTACCTCatga AGAGGUAG m7b Disrupted HPTA4_1654_G7389.1_2233817
hsa-miR-4500 tttaCTACCTCAtga UGAGGUAG m8a Disrupted HPTA4_1654_G7389.1_2233817
hsa-miR-98-5p tttaCTACCTCAtga UGAGGUAG m8a Disrupted HPTA4_1654_G7389.1_2233817
hsa-let-7a-5p tttaCTACCTCAtga UGAGGUAG m8a Disrupted HPTA4_1654_G7389.1_2233817
hsa-let-7b-5p tttaCTACCTCAtga UGAGGUAG m8a Disrupted HPTA4_1654_G7389.1_2233817
hsa-let-7c-5p tttaCTACCTCAtga UGAGGUAG m8a Disrupted HPTA4_1654_G7389.1_2233817
hsa-let-7d-5p tttaCTACCTCatga AGAGGUAG m7b Disrupted HPTA4_1654_G7389.1_2233817
hsa-let-7e-5p tttaCTACCTCAtga UGAGGUAG m8a Disrupted HPTA4_1654_G7389.1_2233817
hsa-let-7f-5p tttaCTACCTCAtga UGAGGUAG m8a Disrupted HPTA4_1654_G7389.1_2233817
hsa-let-7g-5p tttaCTACCTCAtga UGAGGUAG m8a Disrupted HPTA4_1654_G7389.1_2233817
hsa-let-7i-5p tttaCTACCTCAtga UGAGGUAG m8a Disrupted HPTA4_1654_G7389.1_2233817

Mutation Mutation ID Sample Name Cancer Type
chr17:g.2330523G>A COSM4531144 CSCC-16-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1206 acctCATGAACAgaa UGUUCAUG m8a Disrupted HPTA4_1654_G7389.1_2233817
hsa-miR-433-3p accTCATGAacagaa AUCAUGAU m6b Disrupted HPTA4_1654_G7389.1_2233817
hsa-miR-26b-3p acctcatGAACAGaa CCUGUUCU m6b Disrupted HPTA4_1654_G7389.1_2233817

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser