SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_005345
Gene Symbol: HSPA1A
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.31817691C>G COSN7870563 8051974 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6768-3p GGCCTTTGcaagatt CAAAGGCC m8a Created HHHSH_1644_HSPA1A|NM_005345-1|exon_utr3|-7.45532935814267|1.40075830915293
hsa-miR-548aw ggccTTTGCAagatt GUGCAAAA m6b Created HHHSH_1644_HSPA1A|NM_005345-1|exon_utr3|-7.45532935814267|1.40075830915293
hsa-miR-527 ggcCTTTGCAagatt CUGCAAAG m7b Created HHHSH_1644_HSPA1A|NM_005345-1|exon_utr3|-7.45532935814267|1.40075830915293
hsa-miR-3978 ggcCTTTCCAagatt GUGGAAAG m7b Disrupted HHHSH_1644_HSPA1A|NM_005345-1|exon_utr3|-7.45532935814267|1.40075830915293
hsa-miR-518a-5p ggcCTTTGCAagatt CUGCAAAG m7b Created HHHSH_1644_HSPA1A|NM_005345-1|exon_utr3|-7.45532935814267|1.40075830915293

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31817668G>A COSM1312022 TCGA-GD-A3OP-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5193 caccattGAGGAGGt UCCUCCUC m7b Disrupted HHHSH_1644_HSPA1A|NM_005345-1|exon_utr3|-7.45532935814267|1.40075830915293

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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