SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_002830
Gene Symbol: PTPN4

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.119977645A>G COSN7331158 8016498 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6742-3p tgttCCCAGGaaatg ACCUGGGU m6b Disrupted HPTA4_2101_G9361.1_120735225
hsa-miR-4646-5p tgTTCCCAGgaaatg ACUGGGAA m7b (m7b->m6b) HPTA4_2101_G9361.1_120735225
hsa-miR-4532 tgttCCCGGGaaatg CCCCGGGG m6b Created HPTA4_2101_G9361.1_120735225
hsa-miR-6783-3p tgttCCCAGGAAatg UUCCUGGG m8a Disrupted HPTA4_2101_G9361.1_120735225
hsa-miR-6852-5p tgttCCCAGGaaatg CCCUGGGG m6b Disrupted HPTA4_2101_G9361.1_120735225
hsa-miR-939-3p tgttCCCAGGaaatg CCCUGGGC m6b Disrupted HPTA4_2101_G9361.1_120735225
hsa-miR-1343-3p tgttCCCAGGAaatg CUCCUGGG m7b Disrupted HPTA4_2101_G9361.1_120735225
hsa-miR-204-3p tgTTCCCAGgaaatg GCUGGGAA m7b (m7b->m6b) HPTA4_2101_G9361.1_120735225
hsa-miR-3074-5p tgttccCAGGAAatg GUUCCUGC m6b Disrupted HPTA4_2101_G9361.1_120735225
hsa-miR-1247-3p tgtTCCCGGGaaatg CCCCGGGA m7b Created HPTA4_2101_G9361.1_120735225

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser