SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001308445
Gene Symbol: NAA50

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.113723975C>T COSM1417891 TCGA-D5-6923-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6511b-3p aggtTGGTGAGctag CCUCACCA m7b Created HHHSH_2394_NAA50|NM_025146|exon_CDS|-7.63700866085036|0.918634237659484
hsa-miR-5189-3p aGGTTGGCgagctag UGCCAACC m7b Disrupted HHHSH_2394_NAA50|NM_025146|exon_CDS|-7.63700866085036|0.918634237659484
hsa-miR-6511a-3p aggtTGGTGAGctag CCUCACCA m7b Created HHHSH_2394_NAA50|NM_025146|exon_CDS|-7.63700866085036|0.918634237659484
hsa-miR-6854-5p aggttggTGAGCTag AAGCUCAG m6b Created HHHSH_2394_NAA50|NM_025146|exon_CDS|-7.63700866085036|0.918634237659484

Mutation Mutation ID Sample Name Cancer Type
chr3:g.113721831G>T COSM4157138 PTC-14C [thyroid][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-580-3p cgcagATTCTCAtgt UUGAGAAU m7b Created HHHSH_2393_NAA50|NM_025146|exon_CDS|-7.73145319670487|-0.708432400028023

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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