SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001290216
Gene Symbol: RARB
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.25569855G>A COSM1043345 TCGA-AX-A0J0-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3191-5p tcaCAGAGAagatcc CUCUCUGG m6b Disrupted HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-4652-3p tcACAGAAaagatcc GUUCUGUU m6b Created HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-4743-3p tcACAGAAAagatcc UUUCUGUC m7a (m6a->m7a) HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-627-3p tcacAGAAAAGAtcc UCUUUUCU m8a Created HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-6809-3p tcacAGAGAAGatcc CUUCUCUU m7a Disrupted HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-942-5p tcacAGAGAAGAtcc UCUUCUCU m8a Disrupted HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-3191-5p tcaCAGAGAagatcc CUCUCUGG m6b Disrupted HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-4652-3p tcACAGAAaagatcc GUUCUGUU m6b Created HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-4743-3p tcACAGAAAagatcc UUUCUGUC m7a (m6a->m7a) HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-627-3p tcacAGAAAAGAtcc UCUUUUCU m8a Created HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-6809-3p tcacAGAGAAGatcc CUUCUCUU m7a Disrupted HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-942-5p tcacAGAGAAGAtcc UCUUCUCU m8a Disrupted HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128

Mutation Mutation ID Sample Name Cancer Type
chr3:g.25569848T>A COSM1223172 587342 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4677-3p gacgatCTCACAGAg UCUGUGAG m8a Disrupted HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-6818-5p gacgaTCACACAgag UUGUGUGA m7b Created HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-4677-3p gacgatCTCACAGAg UCUGUGAG m8a Disrupted HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-6818-5p gacgaTCACACAgag UUGUGUGA m7b Created HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128

Mutation Mutation ID Sample Name Cancer Type
chr3:g.25569847C>T COSM1422186 TCGA-CA-6717-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-203a-3p ggacgATTTCACaga GUGAAAUG m7a Created HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-4677-3p ggacgatCTCACAGa UCUGUGAG m7b Disrupted HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-203a-3p ggacgATTTCACaga GUGAAAUG m7a Created HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-4677-3p ggacgatCTCACAGa UCUGUGAG m7b Disrupted HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128

Mutation Mutation ID Sample Name Cancer Type
chr3:g.25569844G>A COSM3592096 TCGA-EE-A2MD-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-219a-5p gttgGACAATCtcac UGAUUGUC m7b Created HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-3912-5p gtTGGACAatctcac AUGUCCAU m6b Created HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-4782-3p gttgGACAATCtcac UGAUUGUC m7b Created HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-5186 gttggaCAATCTCac AGAGAUUG m7b Created HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-6766-3p gttgGACAATCtcac UGAUUGUC m7b Created HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-219a-5p gttgGACAATCtcac UGAUUGUC m7b Created HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-3912-5p gtTGGACAatctcac AUGUCCAU m6b Created HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-4782-3p gttgGACAATCtcac UGAUUGUC m7b Created HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-5186 gttggaCAATCTCac AGAGAUUG m7b Created HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128
hsa-miR-6766-3p gttgGACAATCtcac UGAUUGUC m7b Created HHKTB_1325_NM_000965|898|937|55.1130854211386|0.24729828899128

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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