SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001282924
Gene Symbol: LRRTM4
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.77519380C>G COSM1647334 TCGA-22-5473-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-130a-3p ttTTGCACTtgagat CAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-130b-3p ttTTGCACTtgagat CAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-19a-3p tTTTGCACttgagat UGUGCAAA m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-19b-3p tTTTGCACttgagat UGUGCAAA m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-301a-3p ttTTGCACTtgagat CAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-301b-3p ttTTGCACTtgagat CAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-3666 ttTTGCACTtgagat CAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-4295 ttTTGCACTtgagat CAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-4465 ttttgcACTTGAGat CUCAAGUA m7a Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-454-3p ttTTGCACTtgagat UAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-513c-5p ttttgcaCTTGAGAt UUCUCAAG m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-514b-5p ttttgcaCTTGAGAt UUCUCAAG m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-519a-3p tttTGCACTTgagat AAAGUGCA m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-519b-3p tttTGCACTTgagat AAAGUGCA m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-519c-3p tttTGCACTTgagat AAAGUGCA m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-548aw TTTTGCACttgagat GUGCAAAA m8a Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-130a-3p ttTTGCACTtgagat CAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-130b-3p ttTTGCACTtgagat CAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-19a-3p tTTTGCACttgagat UGUGCAAA m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-19b-3p tTTTGCACttgagat UGUGCAAA m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-301a-3p ttTTGCACTtgagat CAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-301b-3p ttTTGCACTtgagat CAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-3666 ttTTGCACTtgagat CAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-4295 ttTTGCACTtgagat CAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-4465 ttttgcACTTGAGat CUCAAGUA m7a Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-454-3p ttTTGCACTtgagat UAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-513c-5p ttttgcaCTTGAGAt UUCUCAAG m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-514b-5p ttttgcaCTTGAGAt UUCUCAAG m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-519a-3p tttTGCACTTgagat AAAGUGCA m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-519b-3p tttTGCACTTgagat AAAGUGCA m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-519c-3p tttTGCACTTgagat AAAGUGCA m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-548aw TTTTGCACttgagat GUGCAAAA m8a Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-130a-3p ttTTGCACTtgagat CAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-130b-3p ttTTGCACTtgagat CAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-19a-3p tTTTGCACttgagat UGUGCAAA m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-19b-3p tTTTGCACttgagat UGUGCAAA m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-301a-3p ttTTGCACTtgagat CAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-301b-3p ttTTGCACTtgagat CAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-3666 ttTTGCACTtgagat CAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-4295 ttTTGCACTtgagat CAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-4465 ttttgcACTTGAGat CUCAAGUA m7a Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-454-3p ttTTGCACTtgagat UAGUGCAA m7b (m7b->m6b) HPKTB_6280_G7940.1_77746514
hsa-miR-513c-5p ttttgcaCTTGAGAt UUCUCAAG m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-514b-5p ttttgcaCTTGAGAt UUCUCAAG m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-519a-3p tttTGCACTTgagat AAAGUGCA m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-519b-3p tttTGCACTTgagat AAAGUGCA m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-519c-3p tttTGCACTTgagat AAAGUGCA m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-548aw TTTTGCACttgagat GUGCAAAA m8a Disrupted HPKTB_6280_G7940.1_77746514

Mutation Mutation ID Sample Name Cancer Type
chr2:g.77519377G>C COSM3799220 TCGA-BT-A3PK-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3616-5p tgCACTTCAgatcta AUGAAGUG m7b (m6b->m7b) HPKTB_6280_G7940.1_77746514
hsa-miR-373-3p tGCACTTCagatcta GAAGUGCU m7a Created HPKTB_6280_G7940.1_77746514
hsa-miR-4465 tgcACTTGAGatcta CUCAAGUA m7a Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-4695-3p tgcactTGAGATCta UGAUCUCA m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-4795-5p tgCACTTCagatcta AGAAGUGG m6b Created HPKTB_6280_G7940.1_77746514
hsa-miR-513c-5p tgcaCTTGAGAtcta UUCUCAAG m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-514b-5p tgcaCTTGAGAtcta UUCUCAAG m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-573 tgCACTTCAGatcta CUGAAGUG m8a Created HPKTB_6280_G7940.1_77746514
hsa-miR-3616-5p tgCACTTCAgatcta AUGAAGUG m7b (m6b->m7b) HPKTB_6280_G7940.1_77746514
hsa-miR-373-3p tGCACTTCagatcta GAAGUGCU m7a Created HPKTB_6280_G7940.1_77746514
hsa-miR-4465 tgcACTTGAGatcta CUCAAGUA m7a Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-4695-3p tgcactTGAGATCta UGAUCUCA m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-4795-5p tgCACTTCagatcta AGAAGUGG m6b Created HPKTB_6280_G7940.1_77746514
hsa-miR-513c-5p tgcaCTTGAGAtcta UUCUCAAG m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-514b-5p tgcaCTTGAGAtcta UUCUCAAG m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-573 tgCACTTCAGatcta CUGAAGUG m8a Created HPKTB_6280_G7940.1_77746514
hsa-miR-3616-5p tgCACTTCAgatcta AUGAAGUG m7b (m6b->m7b) HPKTB_6280_G7940.1_77746514
hsa-miR-373-3p tGCACTTCagatcta GAAGUGCU m7a Created HPKTB_6280_G7940.1_77746514
hsa-miR-4465 tgcACTTGAGatcta CUCAAGUA m7a Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-4695-3p tgcactTGAGATCta UGAUCUCA m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-4795-5p tgCACTTCagatcta AGAAGUGG m6b Created HPKTB_6280_G7940.1_77746514
hsa-miR-513c-5p tgcaCTTGAGAtcta UUCUCAAG m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-514b-5p tgcaCTTGAGAtcta UUCUCAAG m7b Disrupted HPKTB_6280_G7940.1_77746514
hsa-miR-573 tgCACTTCAGatcta CUGAAGUG m8a Created HPKTB_6280_G7940.1_77746514

Mutation Mutation ID Sample Name Cancer Type
chr2:g.77253782T>C COSN6559165 ICGC_MB63 [central_nervous_system][brain][primitive_neuroectodermal_tumour-medulloblastoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4699-5p tatgtAATCTTCatt AGAAGAUU m7b Disrupted HPKTB_5867_G7394.1_77480917

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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