SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001282690
Gene Symbol: SECISBP2

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.89325522C>G COSM1110968 TCGA-A5-A0GV-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4428 gcctatTCTCCTTat CAAGGAGA m7b Disrupted HHKTB_4099_NM_024077|330|369|30.457231416945|0.577498111659526
hsa-miR-6816-3p gcctattGTCCTTat GAAGGACC m6b Created HHKTB_4099_NM_024077|330|369|30.457231416945|0.577498111659526
hsa-miR-6826-5p gCCTATTGtccttat UCAAUAGG m7b Created HHKTB_4099_NM_024077|330|369|30.457231416945|0.577498111659526
hsa-miR-6888-5p gcctatTCTCCTTat AAGGAGAU m7a Disrupted HHKTB_4099_NM_024077|330|369|30.457231416945|0.577498111659526
hsa-miR-8080 gcctatTGTCCTTat GAAGGACA m7b Created HHKTB_4099_NM_024077|330|369|30.457231416945|0.577498111659526
hsa-miR-3173-3p gcctattCTCCTTat AAAGGAGG m6b Disrupted HHKTB_4099_NM_024077|330|369|30.457231416945|0.577498111659526

Mutation Mutation ID Sample Name Cancer Type
chr9:g.89325515G>T COSM753913 TCGA-22-4613-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5583-3p tCCATATTCctattc GAAUAUGG m8a (m7a->m8a) HHKTB_4099_NM_024077|330|369|30.457231416945|0.577498111659526

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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