SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001270401
Gene Symbol: RXRB
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.33197881G>A COSM1131900 TCGA-EJ-5521-01 [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3691-5p acCATCCACaaagac AGUGGAUG m7b (m6b->m7b) HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-376b-5p accATCCACaaagac CGUGGAUA m6b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-376c-5p accATCCACaaagac GGUGGAUA m6b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-432-3p aCCATCCAcaaagac CUGGAUGG m7b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-4752 accATCCACAAagac UUGUGGAU m8a Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-4754 accaTCCGCAaagac AUGCGGAC m6b Disrupted HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-6833-5p accaTCCACAaagac GUGUGGAA m6b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-6844 accatccACAAAGAc UUCUUUGU m7b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-6850-5p accaTCCGCAaagac GUGCGGAA m6b Disrupted HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-8056 accATCCACaaagac CGUGGAUU m6b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-3691-5p acCATCCACaaagac AGUGGAUG m7b (m6b->m7b) HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-376b-5p accATCCACaaagac CGUGGAUA m6b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-376c-5p accATCCACaaagac GGUGGAUA m6b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-432-3p aCCATCCAcaaagac CUGGAUGG m7b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-4752 accATCCACAAagac UUGUGGAU m8a Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-4754 accaTCCGCAaagac AUGCGGAC m6b Disrupted HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-6833-5p accaTCCACAaagac GUGUGGAA m6b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-6844 accatccACAAAGAc UUCUUUGU m7b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-6850-5p accaTCCGCAaagac GUGCGGAA m6b Disrupted HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-8056 accATCCACaaagac CGUGGAUU m6b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-3691-5p acCATCCACaaagac AGUGGAUG m7b (m6b->m7b) HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-376b-5p accATCCACaaagac CGUGGAUA m6b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-376c-5p accATCCACaaagac GGUGGAUA m6b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-432-3p aCCATCCAcaaagac CUGGAUGG m7b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-4752 accATCCACAAagac UUGUGGAU m8a Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-4754 accaTCCGCAaagac AUGCGGAC m6b Disrupted HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-6833-5p accaTCCACAaagac GUGUGGAA m6b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-6844 accatccACAAAGAc UUCUUUGU m7b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-6850-5p accaTCCGCAaagac GUGCGGAA m6b Disrupted HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-8056 accATCCACaaagac CGUGGAUU m6b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717

Mutation Mutation ID Sample Name Cancer Type
chr6:g.33197876G>T COSM257936 TCGA-AG-3892-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3974 ccgcaaaGACCTTac AAAGGUCA m6b Disrupted HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-4678 ccgcaAATACCTTac AAGGUAUU m8a Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-548ag ccgcaaaTACCTTac AAAGGUAA m6b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-548ai ccgcaaaTACCTTac AAAGGUAA m6b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-548ba ccgcaaaTACCTTac AAAGGUAA m6b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-570-5p ccgcaaaTACCTTac AAAGGUAA m6b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717

Mutation Mutation ID Sample Name Cancer Type
chr6:g.33197863C>G COSM4006463 B65-Tumor [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-144-3p acATACTGTtgccgg UACAGUAU m7b (m6b->m7b) HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-196a-3p acatacTGTTGCCGg CGGCAACA m8a Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-31-5p acatacTCTTGCCgg AGGCAAGA m7b Disrupted HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-4709-5p acatACTGTTGccgg ACAACAGU m7b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-144-3p acATACTGTtgccgg UACAGUAU m7b (m6b->m7b) HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-196a-3p acatacTGTTGCCGg CGGCAACA m8a Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-31-5p acatacTCTTGCCgg AGGCAAGA m7b Disrupted HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-4709-5p acatACTGTTGccgg ACAACAGU m7b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-144-3p acATACTGTtgccgg UACAGUAU m7b (m6b->m7b) HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-196a-3p acatacTGTTGCCGg CGGCAACA m8a Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-31-5p acatacTCTTGCCgg AGGCAAGA m7b Disrupted HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717
hsa-miR-4709-5p acatACTGTTGccgg ACAACAGU m7b Created HHKTB_1571_NM_021976|876|915|48.8973239074763|1.01815351248717

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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