SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001254
Gene Symbol: CDC6
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.40291085A>G COSM2838927 CHEWS027 [bone][femur][Ewings_sarcoma-peripheral_primitive_neuroectodermal_tumour][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-224-3p actccCCATTTacct AAAAUGGU m6b Disrupted HHKTB_1044_NM_001254|389|428|63.4007674393549|2.07414321659029
hsa-miR-3150a-3p aCTCCCCAtttacct CUGGGGAG m7b Disrupted HHKTB_1044_NM_001254|389|428|63.4007674393549|2.07414321659029
hsa-miR-4506 actcCCCATTTacct AAAUGGGU m7a Disrupted HHKTB_1044_NM_001254|389|428|63.4007674393549|2.07414321659029
hsa-miR-4694-3p actccCCATTTacct CAAAUGGA m6b Disrupted HHKTB_1044_NM_001254|389|428|63.4007674393549|2.07414321659029
hsa-miR-522-3p actccCCATTTacct AAAAUGGU m6b Disrupted HHKTB_1044_NM_001254|389|428|63.4007674393549|2.07414321659029
hsa-miR-6777-5p aCTCCCCGTttacct ACGGGGAG m8a (m7a->m8a) HHKTB_1044_NM_001254|389|428|63.4007674393549|2.07414321659029
hsa-miR-6763-5p aCTCCCCAtttacct CUGGGGAG m7b Disrupted HHKTB_1044_NM_001254|389|428|63.4007674393549|2.07414321659029
hsa-miR-553 actccCCGTTTacct AAAACGGU m6b Created HHKTB_1044_NM_001254|389|428|63.4007674393549|2.07414321659029

Mutation Mutation ID Sample Name Cancer Type
chr17:g.40291084C>T COSM220411 DLBCL-PatientJ [haematopoietic_and_lymphoid_tissue][lymph_node][lymphoid_neoplasm][diffuse_large_B_cell_lymphoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4506 cactcCCCATTTacc AAAUGGGU m7a Disrupted HHKTB_1044_NM_001254|389|428|63.4007674393549|2.07414321659029
hsa-miR-135a-3p cacTCCCTATttacc UAUAGGGA m7b Created HHKTB_1044_NM_001254|389|428|63.4007674393549|2.07414321659029
hsa-miR-224-3p cactccCCATTTacc AAAAUGGU m6b Disrupted HHKTB_1044_NM_001254|389|428|63.4007674393549|2.07414321659029
hsa-miR-3150a-3p caCTCCCCAtttacc CUGGGGAG m7b (m7b->m6b) HHKTB_1044_NM_001254|389|428|63.4007674393549|2.07414321659029
hsa-miR-3162-5p caCTCCCTAtttacc UUAGGGAG m7b (m6b->m7b) HHKTB_1044_NM_001254|389|428|63.4007674393549|2.07414321659029
hsa-miR-3175 caCTCCCCatttacc CGGGGAGA m6b Disrupted HHKTB_1044_NM_001254|389|428|63.4007674393549|2.07414321659029
hsa-miR-4694-3p cactccCCATTTacc CAAAUGGA m6b Disrupted HHKTB_1044_NM_001254|389|428|63.4007674393549|2.07414321659029
hsa-miR-4739 caCTCCCTatttacc AAGGGAGG m6b Created HHKTB_1044_NM_001254|389|428|63.4007674393549|2.07414321659029
hsa-miR-4756-5p caCTCCCTatttacc CAGGGAGG m6b Created HHKTB_1044_NM_001254|389|428|63.4007674393549|2.07414321659029
hsa-miR-522-3p cactccCCATTTacc AAAAUGGU m6b Disrupted HHKTB_1044_NM_001254|389|428|63.4007674393549|2.07414321659029
hsa-miR-6763-5p caCTCCCCAtttacc CUGGGGAG m7b (m7b->m6b) HHKTB_1044_NM_001254|389|428|63.4007674393549|2.07414321659029

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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