SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001237
Gene Symbol: CCNA2
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.121821000C>A COSM1247602 ESO-887 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1257 atATTCACacatacc AGUGAAUG m6b Disrupted HPSLB_5699_G6955.1_122742139
hsa-miR-4307 atattcAAACATacc AAUGUUUU m6b Created HPSLB_5699_G6955.1_122742139
hsa-miR-511-3p atattcACACATacc AAUGUGUA m6b Disrupted HPSLB_5699_G6955.1_122742139
hsa-miR-567 atattcaAACATACc AGUAUGUU m7b Created HPSLB_5699_G6955.1_122742139
hsa-miR-6818-5p atatTCACACAtacc UUGUGUGA m7b Disrupted HPSLB_5699_G6955.1_122742139

Mutation Mutation ID Sample Name Cancer Type
chr4:g.121820982G>T COSM3825084 TCGA-AN-A046-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-136-5p gggaAATGGAGgtaa ACUCCAUU m7b Disrupted HPSLB_5699_G6955.1_122742139
hsa-miR-4777-3p gggaaatTGAGGTAa AUACCUCA m7b Created HPSLB_5699_G6955.1_122742139

Mutation Mutation ID Sample Name Cancer Type
chr4:g.121820732A>T COSM585563 TCGA-05-4426-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6875-3p catGAAGAAacagcc AUUCUUCC m6b Disrupted HPSLB_5698_G6954.1_122741887
hsa-miR-3682-5p catGAAGTAacagcc CUACUUCU m6b Created HPSLB_5698_G6954.1_122741887

Mutation Mutation ID Sample Name Cancer Type
chr4:g.121820716C>G COSM202846 TCGA-AA-A01T-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1245a gacATCACTaacagt AAGUGAUC m6b Disrupted HPSLB_5698_G6954.1_122741887
hsa-miR-8062 gacATCACTaacagt CAGUGAUU m6b Disrupted HPSLB_5698_G6954.1_122741887
hsa-miR-8079 gacATCACTaacagt CAGUGAUC m6b Disrupted HPSLB_5698_G6954.1_122741887
hsa-miR-921 gacaTCACTAacagt CUAGUGAG m6b Disrupted HPSLB_5698_G6954.1_122741887

Mutation Mutation ID Sample Name Cancer Type
chr4:g.121820709T>C COSM3599627 TCGA-FR-A3YN-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1-5p ctaacAGTATGagag ACAUACUU m6b Disrupted HPSLB_5698_G6954.1_122741887
hsa-miR-452-5p ctAACAGTatgagag AACUGUUU m6b Disrupted HPSLB_5698_G6954.1_122741887
hsa-miR-4676-3p ctAACAGTatgagag CACUGUUU m6b Disrupted HPSLB_5698_G6954.1_122741887
hsa-miR-4728-3p ctaaCAGCATGagag CAUGCUGA m7a Created HPSLB_5698_G6954.1_122741887
hsa-miR-892c-3p ctAACAGTatgagag CACUGUUU m6b Disrupted HPSLB_5698_G6954.1_122741887

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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