SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001206836
Gene Symbol: RAB11A
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr15:g.65887788T>C COSM470977 TCGA-CJ-5679-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6880-5p attcatgCTCCACCa UGGUGGAG m7b Created HHKTB_1523_NM_004663|702|741|50.1404762102087|3.31143497770318
hsa-miR-6081 attcaTGCTCCacca AGGAGCAG m6b Created HHKTB_1523_NM_004663|702|741|50.1404762102087|3.31143497770318

Mutation Mutation ID Sample Name Cancer Type
chr15:g.65887775G>C COSM3988080 TCGA-DW-7837-01 [kidney][NS][carcinoma][papillary_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6876-5p caatgtgCTTCCTat CAGGAAGG m6b Created HHKTB_1523_NM_004663|702|741|50.1404762102087|3.31143497770318
hsa-miR-6828-5p caatgTGCTTCCTat AGGAAGCA m8a Created HHKTB_1523_NM_004663|702|741|50.1404762102087|3.31143497770318
hsa-miR-671-5p caatgtGCTTCCTat AGGAAGCC m7a Created HHKTB_1523_NM_004663|702|741|50.1404762102087|3.31143497770318
hsa-miR-4476 caatgtgCTTCCTat CAGGAAGG m6b Created HHKTB_1523_NM_004663|702|741|50.1404762102087|3.31143497770318
hsa-miR-3914 caatgtGGTTCCTat AAGGAACC m7b Disrupted HHKTB_1523_NM_004663|702|741|50.1404762102087|3.31143497770318

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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