SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001198759
Gene Symbol: LY75-CD302

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.159805110C>T COSM570580 TCGA-49-6742-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548as-3p cGGGTTTTtcatcag UAAAACCC m7b Created HPSLB_4482_G5462.1_160661599
hsa-miR-548bb-3p cgGGTTTTTcatcag CAAAAACC m7b (m6b->m7b) HPSLB_4482_G5462.1_160661599
hsa-miR-548d-3p cgGGTTTTTcatcag CAAAAACC m7b (m6b->m7b) HPSLB_4482_G5462.1_160661599
hsa-miR-548h-3p cgGGTTTTTcatcag CAAAAACC m7b (m6b->m7b) HPSLB_4482_G5462.1_160661599
hsa-miR-548z cgGGTTTTTcatcag CAAAAACC m7b (m6b->m7b) HPSLB_4482_G5462.1_160661599
hsa-miR-539-5p cgggTTTCTCatcag GGAGAAAU m6b Disrupted HPSLB_4482_G5462.1_160661599
hsa-miR-548ac cgGGTTTTTcatcag CAAAAACC m7b (m6b->m7b) HPSLB_4482_G5462.1_160661599
Mutation Mutation ID Sample Name Cancer Type
chr2:g.159805100C>T COSM174066 TCGA-BS-A0TC-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr2:g.159805099G>A COSM1008185 TCGA-AP-A056-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1279 tcagttCAATATGca UCAUAUUG m7b Created HPSLB_4482_G5462.1_160661599
hsa-miR-203b-3p tCAGTTCAAtatgca UUGAACUG m8a (m7a->m8a) HPSLB_4482_G5462.1_160661599

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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