SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001195308
Gene Symbol: CGGBP1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.88080038T>C COSN9577374 AOCS-166-1-2 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-887-5p ttttttTCCCAAaca CUUGGGAG m6b Created HPSLB_5008_G6122.1_88129191
hsa-miR-7850-5p tttttttTCCAAACa GUUUGGAC m7a Disrupted HPSLB_5008_G6122.1_88129191
hsa-miR-6740-5p tttttttCCCAAACa AGUUUGGG m7b Created HPSLB_5008_G6122.1_88129191
hsa-miR-6739-5p ttttTTTCCCAaaca UGGGAAAG m7a Created HPSLB_5008_G6122.1_88129191
hsa-miR-6733-5p ttttTTTCCCAaaca UGGGAAAG m7a Created HPSLB_5008_G6122.1_88129191
hsa-miR-6124 tttTTTTCCCaaaca GGGAAAAG m7a Created HPSLB_5008_G6122.1_88129191
hsa-miR-4668-5p tttTTTTCCCaaaca AGGGAAAA m7b Created HPSLB_5008_G6122.1_88129191
hsa-miR-450a-1-3p tttttTTCCCAAaca AUUGGGAA m7b Created HPSLB_5008_G6122.1_88129191
hsa-miR-3978 tttttTTTCCAaaca GUGGAAAG m6b Disrupted HPSLB_5008_G6122.1_88129191
hsa-miR-3153 ttttTTTCCCaaaca GGGGAAAG m6b Created HPSLB_5008_G6122.1_88129191
hsa-miR-3148 tttTTTTTCCAaaca UGGAAAAA m8a Disrupted HPSLB_5008_G6122.1_88129191
hsa-miR-3122 ttttttTCCCAAaca GUUGGGAC m6b Created HPSLB_5008_G6122.1_88129191

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser