SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001166496
Gene Symbol: SLC16A1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.112914129C>A COSM462641 TCGA-B2-4099-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-16-1-3p aaatacaAATACTGg CCAGUAUU m7b Created HPRO8_1365_G1794.1_113456750
hsa-miR-223-5p aAATACACatactgg CGUGUAUU m7b Disrupted HPRO8_1365_G1794.1_113456750
hsa-miR-511-3p aaaTACACATactgg AAUGUGUA m7b Disrupted HPRO8_1365_G1794.1_113456750

Mutation Mutation ID Sample Name Cancer Type
chr1:g.112914080C>T COSM527711 TCGA-64-1676-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-95-5p atctcTTTATTGgca UCAAUAAA m7b Created HPRO8_1364_G1793.1_113456706
hsa-miR-4709-3p atCTCTTCAttggca UUGAAGAG m7b (m7b->m6b) HPRO8_1364_G1793.1_113456706
hsa-miR-4311 aTCTCTTTattggca GAAAGAGA m7b Created HPRO8_1364_G1793.1_113456706

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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